BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902084
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein... 1064 0.0
AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix (... 261 7e-69
> AT2G41240.1 | Symbols: BHLH100 | basic helix-loop-helix protein
100 | chr2:17198331-17199320 REVERSE LENGTH=729
Length=729
Score = 1064 bits (576), Expect = 0.0
Identities = 680/731 (93%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 1 ATGTGTGCACTTGTCCCTCCATTATATCCCAACTTCGGCTGGCCTTGCGGAGATAATAGC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1 ATGTGTGCACTTGTCCCTCCATTATATCCCAATTTCGGCTGGCCTTGCGGAGATCATAGC 60
Query 61 TTCTATGAAAACGAAGACGTAACCAACACGTTTCTTGATTTTCCGTTGCCGGACTTGACG 120
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTATGAAACCGACGACGTATCCAACACGTTTCTTGATTTTCCGTTGCCGGACTTGACG 120
Query 121 GTGACTCATCAGAATGTGTCATCGGAAAATAATAGAATATTACTAGACAATCCCGTGGTG 180
||||||||| |||||||||| || || ||||| |||| ||||||||||||||||||||||
Sbjct 121 GTGACTCATGAGAATGTGTCGTCTGAGAATAACAGAACATTACTAGACAATCCCGTGGTG 180
Query 181 ATGAAGAAACTTAATCACAACGCGAGCGAGCGTGAGCGTCGCAAGAAGATCAACGCAATG 240
|||||||| ||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 181 ATGAAGAAGCTTAATCACAACGCGAGTGAACGTGAGCGTCGCAAGAAGATCAACACAATG 240
Query 241 TTCTCATCTCTTCGTTCTTGTCTTCCGGCCACCAATCAATCGAAGAAGCTAAGTGTTTCC 300
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 241 TTCTCATCTCTTCGTTCTTGTCTTCCTCCCACCAATCAAACGAAGAAGTTAAGTGTTTCG 300
Query 301 GCAACAGTTTCACAGGCATTGAAGTACATACCAGAGCTGCAAGAGCAAGTTAAAAATCTC 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCAACAGTTTCACAAGCATTGAAGTACATACCAGAGCTGCAAGAGCAAGTTAAAAAGCTC 360
Query 361 ATAAAGAAGAAAGAAGAGCTCTCGTTTCAAATATCGGGTCAAAGAGATCTCGTTT-CTAC 419
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 361 ATGAAGAAGAAAGAAGAGCTCTCGTTTCAAATTTCGGGTCAAAGAGATCTCGTTTAC-AC 419
Query 420 CGGCCAAAACAGTAAGCCAGAGAAAACGATCACAAGTTATGCATCAACAGTTTCTGCGAC 479
|| ||||||||||||| ||||| || | | ||||| ||||| || ||||||||| ||||
Sbjct 420 CGACCAAAACAGTAAGTCAGAGGAAGGGGTTACAAGCTATGCGTCGACAGTTTCTTCGAC 479
Query 480 AAGGCTCTGTGAGACCGAAGTGATGGTCCAAATTTCATCGTTACAGGCTGAAAAATGTTC 539
|||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 TAGGCTCAGTGAGACTGAAGTGATGGTCCAAATTTCATCGTTACAGACTGAAAAATGTTC 539
Query 540 GTTTGGGAATGTGC-TGAGTGGAGTAGAAGAAGATGGGTTGGTTCTTGTGGATGCTTCAT 598
|||||||||||| | ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 540 GTTTGGGAATGT-CTTGAGTGGTGTAGAAGAAGATGGGTTGGTTCTTGTGGGTGCTTCAT 598
Query 599 CCTCAAGGTCTCAAGGAGAGCGACTCTTTTACTCTTTGCATCTTCAGATGGAAAATGGCC 658
| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 599 CTTCAAGGTCTCATGGAGAGCGACTCTTTTACTCTATGCATCTTCAGATAAAAAATGGCC 658
Query 659 AGGTGAATTCCGAAGAGTTAGGTGATAGATTGTTGTACTTGTACGAGAAATGTGGACACT 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGTGAATTCCGAAGAATTAGGTGATAGATTGTTGTACTTGTACGAGAAATGTGGACACT 718
Query 719 CGTTTACATGA 729
|||||||||||
Sbjct 719 CGTTTACATGA 729
> AT3G56980.1 | Symbols: BHLH039, ORG3 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein | chr3:21086546-21087494
REVERSE LENGTH=843
Length=843
Score = 261 bits (141), Expect = 7e-69
Identities = 448/589 (76%), Gaps = 49/589 (8%)
Strand=Plus/Plus
Query 167 ACAATCCCGTGGT-GATGAAGAAACTTAATCACAACGCGAGCGAGCGTGAGCGTCGCAAG 225
||||||| ||||| | | ||||| ||||||||||| || || |||||||| ||||||| |
Sbjct 212 ACAATCCGGTGGTCG-TCAAGAAGCTTAATCACAATGCTAGTGAGCGTGACCGTCGCAGG 270
Query 226 AAGATCAACGCAATGTTCTCATCTCTTCGTTCTTGTCTTCCGGCCACCAATCAATCGAAG 285
|| || ||| | ||||||||||||| ||||| |||||||| ||| | |||||||||
Sbjct 271 AAAATTAACTCTTTGTTCTCATCTCTCCGTTCATGTCTTCCTGCCTCTGGCCAATCGAAG 330
Query 286 AAGCTAAGTGTTTCC-GCAACAGTTTCAC-AGGCATTGAAGTACATACCAGAGCTGCAAG 343
|||||||| |||| || || ||||| | | || |||||||||||||||||||||||||
Sbjct 331 AAGCTAAG-CATTCCTGCGACGGTTTCTCGAAGC-TTGAAGTACATACCAGAGCTGCAAG 388
Query 344 AGCAAGTTAAAAATCTCATAAAGAAGAAAGAAGAGCTCTCGTTTCAAATATCGGGTCAAA 403
||||||| || || || ||||| ||||| |||||||||| | | ||||| || |||||||
Sbjct 389 AGCAAGTGAAGAAGCTAATAAAAAAGAAGGAAGAGCTCTTGGTGCAAATTTCAGGTCAAA 448
Query 404 GAGAT-CTCGTTTCT-ACCGGCCAAAACAGTAAGCCAGAGAAAACGATCAC-AAGT-TAT 459
|| | || | | | || | || ||| | ||| || || || | || | |||
Sbjct 449 GAAACACT-GAATGTTAC-GTT-AAG-CAGCCA-CCAAAGGC--CG-TCGCGAATTATAT 500
Query 460 GCATCAACAGTTTCTGCGACAAGGCTCTG-TGAGACCGAAGTGATGGTCCAAATTTCATC 518
| || || ||||||||||| ||||| || ||| | |||||||||||||||||| |||||
Sbjct 501 -C-TCGACCGTTTCTGCGACTAGGCT-TGGTGACAACGAAGTGATGGTCCAAATCTCATC 557
Query 519 GTTACAGGCTGAAAAA-TGTTCGTT-TGGGAATGTGCTGAGTGGAGT-AGAAGAAGATGG 575
|| || | | | || | |||| | | ||||| | ||||| || |||||||||| |
Sbjct 558 GTC-CAAGATTCATAACTTTTCGATATCT-AATGTTTTAAGTGG-GTTAGAAGAAGATAG 614
Query 576 GTTGGTTCTTGTGGA--TGCTTCATCCTCAAGGTCTCAAGGAGAGCGACTCTTT-TACTC 632
||| ||||||||||| || | |||| ||||||||||||||||| | || ||| ||| |
Sbjct 615 GTTTGTTCTTGTGGACATG-T-CATCTTCAAGGTCTCAAGGAGAAAGGCT-TTTCTACAC 671
Query 633 TTTGCATCTT-CA-GATGGA-AA-ATGGC------CAGG-TGAATTCCGAAGAGTTAGGT 681
||||||| || || | |||| || || | || | |||||| |||||||||| ||
Sbjct 672 TTTGCAT-TTACAAG-TGGAGAAGATTGAAAATTACAAGCTGAATTGCGAAGAGTTAAGT 729
Query 682 GATAG-ATTGTTGTACTTGTACGAGAAATGTGGACACTCGTTTACATGA 729
| || || |||||||||||| ||| |||||||| |||| | || ||||
Sbjct 730 CAGAGGAT-GTTGTACTTGTATGAGGAATGTGGAAACTCATATATATGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5