BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902101

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41360.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   270    8e-72


> AT2G41360.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr2:17234374-17236279 FORWARD LENGTH=1318
Length=1318

 Score =  270 bits (146),  Expect = 8e-72
 Identities = 267/319 (84%), Gaps = 33/319 (10%)
 Strand=Plus/Plus

Query  176   CTCTTGTTCATTCTCGT-CAAGCTGAGGATATCCAGCGCGGT-ATTGCCATGCTCGAAGC  233
             ||||||||||||||| | |||||||| | ||||||||| ||| ||| |||||||||||||
Sbjct  1025  CTCTTGTTCATTCTC-TCCAAGCTGAAGTTATCCAGCGAGGTAATT-CCATGCTCGAAGC  1082

Query  234   TTCTCTAGCAAGCAGTAGCCCTCCTTTGGAAGACCGGGAGAAGCTTTACCTTCTTGCTGT  293
             |||||||||||||||||||||| |  |     ||||| || || |||| |||||||||||
Sbjct  1083  TTCTCTAGCAAGCAGTAGCCCT-C--T-----ACCGGAAGTAGTTTTATCTTCTTGCTGT  1134

Query  294   TGCATATTACCGGACTGGGGATTACTCAAAGAGCAGGCAGCTAGTGGAACGTTGTATCGA  353
             || ||||||||||||||||||  ||||   ||  |   |  ||  || |   |  ||   
Sbjct  1135  TGGATATTACCGGACTGGGGA--ACTC---GA-TA---A--TA--GG-A---T-CAT---  1173

Query  354   GATTCAACCTGATTGGAGGCAAGCTTTGGTCTTAAAGAAAACTATTGAAGACAAGATCGC  413
             |||||||| | ||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct  1174  GATTCAACATCATTGGAGGCAATCTTTGGTCTTAAAGAAATCCATTGAAGACAAGATCGC  1233

Query  414   AAAGGATGGTGTTATTGGGATAGGCATCACGGCTACAGCCGTTGGCCTCATAGCTGGTGG  473
              ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||
Sbjct  1234  TAAGGATGGTGTTATTGGGATAGGCATCACAGCTACAACCGTTGGCCTCATAGCTAGTGG  1293

Query  474   AATCGCTGCAGCTTTGGCT  492
             |||||||||||||||||||
Sbjct  1294  AATCGCTGCAGCTTTGGCT  1312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24062156413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5