BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902115
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41480.1 | Symbols: | Peroxidase superfamily protein | chr2... 1580 0.0
> AT2G41480.1 | Symbols: | Peroxidase superfamily protein | chr2:17296812-17298731
REVERSE LENGTH=1202
Length=1202
Score = 1580 bits (855), Expect = 0.0
Identities = 944/987 (96%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGTGTACGTAGGAAAGTATTGTTATGTAATG---ATAA---TAGTGTTGGTGTTG 54
|||||||||||| |||| |||||||||||| ||||| |||| ||||||||||||||
Sbjct 42 ATGGGAGTGTACTTAGGTAAGTATTGTTATATAATGATAATAATGTTAGTGTTGGTGTTG 101
Query 55 GGAAACGAAGTGAGAAGCCAATTGTTAAAAAATGGTTATTATTCAACTTCATGTCCAAAA 114
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 102 GGAAAAGAAGTGAGAAGCCAGTTGTTAAAAAATGGTTATTATTCAACTTCATGTCCAAAA 161
Query 115 GCTGAGTCGATAGTAAGATCCACTGTTGAATCTCACTTTGATTCTGATCCCACAATTTCC 174
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 GCTGAGTCGATAGTTAGATCCACTGTTGAATCTCACTTTGATTCTGATCCCACAATTTCC 221
Query 175 CCTGGCTTGCTTCGGCTTCATTTCCATGACTGTTTTGTTCAGGGTTGTGATGGTTCGGTT 234
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CCTGGCTTGCTTAGGCTTCATTTCCATGACTGTTTTGTTCAGGGTTGTGATGGTTCGGTT 281
Query 235 TTAATCAAAGGGAAATCTGCGGAGCAAGCTGCTCTACCGAATCTTGGTCTAAGAGGGTTC 294
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 282 TTAATCAAAGGGAAATCTGCGGAGCAAGCTGCTCTACCAAATCTTGGTCTAAGAGGTTTA 341
Query 295 GAAGTGATCGACGATGCGAAAGCCCGGCTCGAGTTGGAGTGTCCAGGAGTGGTGTCATGT 354
||||||||||| ||||| ||||||||||| ||| || |||||||||||| |||||||||
Sbjct 342 GAAGTGATCGATGATGCTAAAGCCCGGCTTGAGGCGGTGTGTCCAGGAGTTGTGTCATGT 401
Query 355 GCAGATATACTTGCACTTGCTGCTCGTGACTCTGTTGACTTGAGTGATGGGCCAAGCTGG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GCAGATATACTTGCACTTGCTGCTCGTGACTCTGTTGACTTGAGTGATGGGCCAAGCTGG 461
Query 415 CGAGTACCAACGGGTCGCAAAGACGGGAGAATCTCGTTGGCAAAAGAAGCATCGAATCTA 474
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 462 CGAGTACCAACGGGTCGTAAAGACGGGAGAATCTCGTTGGCAACTGAAGCATCGAATCTA 521
Query 475 CCTTCTCCACTTGACTCTGTTTCTGTTCAAAAGCAAAAGTTCCAAGATAAAGGATTGGAT 534
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 522 CCTTCTCCACTTGACTCTGTTGCTGTTCAAAAGCAAAAGTTTCAAGATAAAGGATTGGAT 581
Query 535 ACTCATGATCTCGTTACTCTACTCGGTGCACATACGATAGGCCAAACGGACTGTCTCTTC 594
||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||||
Sbjct 582 ACTCATGATCTAGTTACTCTACTAGGTGCACATACAATTGGACAAACCGACTGTCTCTTC 641
Query 595 TTCCGTTACCGTCTATACAACTTCACGGTGACCGGAAACTCCGATCCAACCATAAGCCCA 654
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTCCGTTACCGTTTATACAACTTCACGGTGACCGGAAACTCCGATCCAACCATAAGCCCA 701
Query 655 TCGTTTCTTACACAGCTCAAGACTCTTTGTCCTCCCAATGGAGACGGTTCCAAACGTGTT 714
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 702 TCGTTTCTTACACAGCTCAAGACTCTTTGTCCTCCCAATGGAGACGGTTCGAAACGTGTT 761
Query 715 GCTCTTGACATTGGTAGTCCTTCAAAATTCGATGAAAGTTTCTTCAAGAACTTACGCGAC 774
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 762 GCTCTTGACATTGGTAGCCCCTCAAAATTCGATGAAAGTTTCTTCAAGAACTTACGCGAC 821
Query 775 GGCAACGCTATTCTAGAGTCGGACCAACGGCTTTGGTCAGACGCCGAGACAAATGAAGTG 834
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 822 GGAAACGCTATTCTAGAGTCGGACCAACGGCTTTGGTCGGACGCCGAGACAAATGCCGTG 881
Query 835 GTGAAGAAGTATGCGAGTCGTCTTAGAGGTTTGTTAGGGTTTAGGTTTGATTATGAGTTT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GTGAAGAAGTATGCGAGTCGTCTTAGAGGTTTGTTAGGGTTTAGGTTTGATTATGAGTTT 941
Query 895 GGTAAAGCTATGATTAAGATGAGTTCCATTGATGTAAAGACTGACGTTGATGGTGAGGTT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 942 GGTAAAGCTATGATTAAGATGAGTTCCATTGATGTAAAGACTGACGTTGATGGCGAGGTT 1001
Query 955 AGGAAAGTTTGTTCCAAGGTGAACTAG 981
|||||||||||||||||||||||||||
Sbjct 1002 AGGAAAGTTTGTTCCAAGGTGAACTAG 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5