BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902116 Length=417 Score E Sequences producing significant alignments: (Bits) Value AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 575 1e-163 AT3G44130.1 | Symbols: | F-box and associated interaction doma... 176 1e-43 > AT2G07110.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 domain 2-like superfamily protein (TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:2952610-2953208 REVERSE LENGTH=453 Length=453 Score = 575 bits (311), Expect = 1e-163 Identities = 369/397 (93%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 23 TGGGATTTATTGAACTCTCTCGTTTATATTTTCAGGGGATACAAAAGTTCTACCTGCACA 82 |||||| || |||||||||||||||||||||||| |||||||||||||||| |||| || Sbjct 33 TGGGATACATGGAACTCTCTCGTTTATATTTTCAGAGGATACAAAAGTTCTATCTGCGCA 92 Query 83 ATACAGACCTAAAGCAGGAACGAAAAAGAACGGAAATGCTGAGAAGGCTTATTTTGAAGT 142 |||| ||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 93 ATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTT-GTTTGAAGT 151 Query 143 CATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAAG 202 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 152 CATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAAA 211 Query 203 GAGGCTTATTTTGTTGCTTGAGAAATGTTGAAAGGGAGTATGAAACGATACTGAAAAGGA 262 ||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 212 GAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAGGA 271 Query 263 CACTACAGAGTATTTGTGTTTTGACAGTTGTTCCAAATATCACCACCTCAGTGATAATTC 322 | |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| Sbjct 272 CGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTATTC 331 Query 323 AGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGGACCTTGGTAAACATT 382 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 332 AGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACATT 391 Query 383 TACTGATGTTGTCTGAAACACATA-A-TCCGGTATAA 417 |||| ||| ||||||||||||||| | |||||||||| Sbjct 392 TACTAATGCTGTCTGAAACACATATAATCCGGTATAA 428 > AT3G44130.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:15881870-15883638 FORWARD LENGTH=942 Length=942 Score = 176 bits (95), Expect = 1e-43 Identities = 108/114 (95%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 59 GGATACAAAAGTTCTACCTGCACAATACAGACCTAAAGCAGGAACGAAAAAGAACGGAAA 118 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 798 GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA 857 Query 119 TGCTGAGAAGGCTTATTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG 172 |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 858 TGCTGAGAAGGCTT-GTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG 910 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19755225357 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5