BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902116

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   575    1e-163
  AT3G44130.1 | Symbols:  | F-box and associated interaction doma...   176    1e-43 


> AT2G07110.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Ribosomal protein S5 domain 2-like superfamily protein 
(TAIR:AT3G46210.6); Has 82 Blast hits to 82 proteins in 
15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; 
Plants - 75; Viruses - 0; Other Eukaryotes - 5 (source: NCBI 
BLink). | chr2:2952610-2953208 REVERSE LENGTH=453
Length=453

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 369/397 (93%), Gaps = 3/397 (1%)
 Strand=Plus/Plus

Query  23   TGGGATTTATTGAACTCTCTCGTTTATATTTTCAGGGGATACAAAAGTTCTACCTGCACA  82
            ||||||  || |||||||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct  33   TGGGATACATGGAACTCTCTCGTTTATATTTTCAGAGGATACAAAAGTTCTATCTGCGCA  92

Query  83   ATACAGACCTAAAGCAGGAACGAAAAAGAACGGAAATGCTGAGAAGGCTTATTTTGAAGT  142
            |||| ||||||||||| ||||||| ||||||| |||||||||||||||||  ||||||||
Sbjct  93   ATACGGACCTAAAGCAAGAACGAAGAAGAACGAAAATGCTGAGAAGGCTT-GTTTGAAGT  151

Query  143  CATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAAG  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  152  CATATGGAAGCCTTAAACCGGATAGATTGGTAATCGTAAATGCGTTTAGTTTTTCAGAAA  211

Query  203  GAGGCTTATTTTGTTGCTTGAGAAATGTTGAAAGGGAGTATGAAACGATACTGAAAAGGA  262
            ||||||| |||||| |||||||||| |||||||  |||||||||||||||||||||||||
Sbjct  212  GAGGCTTGTTTTGTCGCTTGAGAAAAGTTGAAAAAGAGTATGAAACGATACTGAAAAGGA  271

Query  263  CACTACAGAGTATTTGTGTTTTGACAGTTGTTCCAAATATCACCACCTCAGTGATAATTC  322
            | |||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct  272  CGCTACAGAGTATTTGTGTTTTGAGAGTTGTTCCAAATACCACCACCTCAGTGATTATTC  331

Query  323  AGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTGGACCTTGGTAAACATT  382
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct  332  AGGTTGTACATGATGGTGGTTCTGTATCGTTTTTATGTTCCTTTCACCTTGGTAAACATT  391

Query  383  TACTGATGTTGTCTGAAACACATA-A-TCCGGTATAA  417
            |||| ||| ||||||||||||||| | ||||||||||
Sbjct  392  TACTAATGCTGTCTGAAACACATATAATCCGGTATAA  428


> AT3G44130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:15881870-15883638 FORWARD LENGTH=942
Length=942

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 108/114 (95%), Gaps = 1/114 (1%)
 Strand=Plus/Plus

Query  59   GGATACAAAAGTTCTACCTGCACAATACAGACCTAAAGCAGGAACGAAAAAGAACGGAAA  118
            |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct  798  GGATACAAAAGTTCTAACTGCACAATACGGACCTAAAGCAAGAACGAAAAAGAACGAAAA  857

Query  119  TGCTGAGAAGGCTTATTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  172
            ||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct  858  TGCTGAGAAGGCTT-GTTTGAAGTCATATGGAAGCCTTAAACCGGATAGATTGG  910



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5