BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902139
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41445.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 891 0.0
AT2G41470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 172 3e-42
> AT2G41445.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G41470.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr2:17275591-17277330 FORWARD LENGTH=684
Length=684
Score = 891 bits (482), Expect = 0.0
Identities = 616/678 (91%), Gaps = 19/678 (3%)
Strand=Plus/Plus
Query 22 ATGAAGTTGAAGGGGAGGCGACGAGATTTGACGAAGAAGAAGAAGGTGAGAGAGCTCTGC 81
||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGAAAGGGAGGCGAAGAGATTTGAC---GAAGAAGAAGGTGAGAGAGCTCTGC 57
Query 82 GATTATTGCGGATTCTCCAGCAGCACCATTAGGTATGATGAACAAAGGCCACACGAACGA 141
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 58 GATTATTGCGGATTCTCTAGCGGCATCATTAGGTATGATGAACAAAGGCCACACGAACGA 117
Query 142 GATCACGAAGCAGTGTCTATGGAGAACGAACTCAAGAGATTACGGCTTTTGACCAGGAGA 201
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 118 GATCACGAAGCAGTGTCTATGGAGAATGAACTCAAGAGATTACGGCTTTTAACCAGGAGA 177
Query 202 ATGACTTGTAAGGATCTCGACGGTCTGACTTTCCCCGAGCTGCTATTACTTGAAAGCCAT 261
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct 178 ATGACTTGTAAGGATCTCGATGGTCTGACTTTCCCCGAGCTGCTATCACTTAAAAGCCAT 237
Query 262 TTGA-AGACTGCCTTGCTCATTGTGAAGGACCGAAGGAAGAAGATA-A--AGCTGCTTAA 317
| | ||||||||||||||||||||||||||| || |||||||||| | ||||||||||
Sbjct 238 CT-ACAGACTGCCTTGCTCATTGTGAAGGACCAAACGAAGAAGATAGAGCAGCTGCTTAA 296
Query 318 AGATGATGAA---TGGATGCTTATACGGAGGAAGG--GC-GATGATCGTGTGGGGATAGA 371
||| ||||| |||||||||||||||||||||| || || ||| || |||||| |||
Sbjct 297 AGAAGATGATGGGTGGATGCTTATACGGAGGAAGGACGCAGAGGATGGTATGGGGAGAGA 356
Query 372 GGTTACTGTTCCCTGCAAATTCTCTACCAGCAGCACGGGGGAGAGACAAGATGATGAAGC 431
|||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 357 GGTTTCTGTTCCCTGCAAATTCTCTACCAGCAGCACGGGTGAGAGACAAGGTGATGAAGC 416
Query 432 ACCAGCACCGCCGCGGCTGTCGAAACTTCAGCGAGAATTCGAGAGACGAAATGCTGAAAC 491
||||||||| |||| ||||| |||| |||| | ||||||||||||||||||||||| |
Sbjct 417 ACCAGCACCACCGC---TGTCGCAACTGCAGCTACAATTCGAGAGACGAAATGCTGAACC 473
Query 492 CATGATGATTGAATACGAGAGATTATGGCTGTTGAAGGAGAGAATGAACGGTAGACAGCT 551
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CATGATGATCGAATACGGGAGATTATGGCTGTTGAAGGAGAGAATGAACGGTAGACAGCT 533
Query 552 TGACGGTATGAATCA-TGGCGAGCTGGGCTTACTTGAAGTTAAGATAGTAAATGGATTGC 610
||||||||||| || || |||||||| ||||||| ||| |||||||||| |||||||||
Sbjct 534 CGACGGTATGAA-CAATGCCGAGCTGGCCTTACTTCAAGCTAAGATAGTACATGGATTGC 592
Query 611 AGGATTTGCTGGAGCATATGTATGCACCAACAAGGGAACAAATCGCTAAGAAGCGCAGAT 670
|||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 593 AGGAGTTGCACGAGCATATGTATGCACCAACAATGGAAAAAATCGCTAAGAAGCGCAGAT 652
Query 671 CTCTGTTAAGAGATGTTC 688
|||||||||||| ||||
Sbjct 653 ATCTGTTAAGAGAGGTTC 670
> AT2G41470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: vacuole; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41440.1); Has 1066 Blast
hits to 825 proteins in 144 species: Archae - 7; Bacteria -
46; Metazoa - 465; Fungi - 36; Plants - 67; Viruses - 4; Other
Eukaryotes - 441 (source: NCBI BLink). | chr2:17289952-17293749
REVERSE LENGTH=1245
Length=1245
Score = 172 bits (93), Expect = 3e-42
Identities = 416/561 (74%), Gaps = 66/561 (12%)
Strand=Plus/Plus
Query 29 TGAAGGGGAGGCGAC-GAGATTTGACGAAGAAGAAGAAGGTGAGAGAGCTCTGCGATTAT 87
||||| ||||||| | |||||||||| ||| | | | |||| ||||||||||| |
Sbjct 647 TGAAGAGGAGGCG-CAGAGATTTGAC---CAAG--G-ATGCGAGATTGCTCTGCGATT-T 698
Query 88 -TGCGGATTCTCCAGCAGCACCATTAGGTATGATGAACAAAGGCCACACGAACGAGATCA 146
|||||||| |||||||| || || || || |||| |||||||||| ||| ||| ||
Sbjct 699 CTGCGGATTATCCAGCAG--CC-GCAGATACGACGAACTAAGGCCACACAAACAAGAACA 755
Query 147 CGAAGCAGTGTCTATGGAGAACGAACTCAAGAGATTACGGCTTTTGACCAGGAGAATGAC 206
|||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 756 TGAAGCACTGTCTATGGAGAGCGAAGTCAAGAGATTACGGCTTTTGACC---AGAATGAC 812
Query 207 TTGTAAGGATCTCGACGGTCTGACTTTCCCCGAGCTGCTATTACTT-GAAAGCCAT-TTG 264
| ||||||||||||||||| ||| |||| ||||||| | ||||| |||| || | | |
Sbjct 813 TGGTAAGGATCTCGACGGTTTGAGTTTCGAGGAGCTGCAAGTACTTAGAAA-CCGTCTAG 871
Query 265 AAGACTGCCTTGCTCATTGTGAAGGA-CCGAAGG----AA-GAAGAT--AA-A-GCTGCT 314
| || || ||||| ||||||| || | | | || || |||| | || | |||||
Sbjct 872 ATGA-TGTCTTGCCCATTGTGGAGAAGCATATGGACAAAATGAAGCTGGAAGAGGCTGC- 929
Query 315 TAAAGATG-ATGAATGGA-TGCTT-ATACGGAGGAAGGGCGATGATCGTGTGGGGATAGA 371
||||| | ||||| | | | || ||| | ||| || | || | | || || ||
Sbjct 930 -AAAGAAGAATGAA-GCAGGGGTTGATA---ATGAA-GG-TACGA--G-GAGGAGA-AG- 977
Query 372 GGTTACT-GTTCCCTGCAAATTCTCT-ACCAGCAGCACGGGGGAGAGAC-A-AG-ATGAT 426
|||| | ||||| |||| ||||||| ||| || || | || ||| ||| | || | |
Sbjct 978 GGTT-TTGGTTCCTTGCAGATTCTCTAACC-GCGGCTCCGGAGAGGGACAACAGAAACA- 1034
Query 427 GAAGCA-CCAGCACCGCCGCGGCTGTCG-AAACTTCAGCGAGAATTCGAGAGACGAAATG 484
| || | |||||| | | | ||||| || ||| |||||||||||| |||||| |
Sbjct 1035 GGAGGATGGAGCACC-AC-CAG-TGTCGCGAA-GGCAGAGAGAATTCGAGAAACGAAAAG 1090
Query 485 CTGAAACC-ATG-ATGATTGAATACGAGAGATTATGGCTGTTGAAGGAGAGAATGAACGG 542
||| |||| ||| | | |||| |||||||||||||||||||||||||||||||| ||
Sbjct 1091 CTG-AACCTATGCA-CAGAGAATTGGAGAGATTATGGCTGTTGAAGGAGAGAATGAATGG 1148
Query 543 TAGACAGCTTGACG-GTATGA 562
||| |||| ||| ||||||
Sbjct 1149 CAGAGAGCT-GACAAGTATGA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5