BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902141
Length=765
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41660.1 | Symbols: MIZ1 | Protein of unknown function, DUF6... 1208 0.0
AT3G25640.1 | Symbols: | Protein of unknown function, DUF617 |... 54.7 1e-06
> AT2G41660.1 | Symbols: MIZ1 | Protein of unknown function, DUF617
| chr2:17367822-17369189 FORWARD LENGTH=1368
Length=1368
Score = 1208 bits (654), Expect = 0.0
Identities = 704/729 (97%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 37 AGATGCTCCTACGTCCCTCTCTCCTCCTCATCGTCGTCCTCTAACAATATCGGGAAACTC 96
||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 289 AGATGCTCCTATGTCCCTCTCTCCTCCTCATCGTCGGCCTCTCACAATATCGGGAAATTT 348
Query 97 CACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAATATCCCCGCTTGC 156
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 349 CACTTGAAGTTTTCTTTGCTCTTGCGTTCTTTCATCAACATCATTAACATCCCCGCTTGC 408
Query 157 AAAATCCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCGGCGTCTCTAACCAACTGATC 216
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 409 AAAATGCTCTCTCTTCCCTCTCCGCCGTCTTCTTCTTCCAGCGTCTCTAACCAACTGATC 468
Query 217 TCACTCGTCACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTTACCGGGACTCTGTACGGA 276
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 469 TCACTCGTTACCGGTGGATCCTCTTCTCTCGGGAGAAGAGTCACCGGGACTCTGTACGGA 528
Query 277 CACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAGAGATCCGACCCGGTCTTG 336
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 CACAAAAGAGGCCACGTCACGTTTTCGGTCCAGTACAACCAAAGATCCGACCCGGTCTTG 588
Query 337 CTCCTGGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCCTCGGGGCTCGTC 396
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 589 CTCCTCGACCTGGCCATGTCAACGGCAACTCTCGTCAAAGAGATGTCGTCGGGGCTCGTC 648
Query 397 AGGATCGCTTTGGAGTGCGAGAAGCGTCATCGATCAGGAACGAAGCTTTTCCAAGAGCCC 456
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 649 AGGATCGCGTTGGAGTGCGAGAAGCGTCATCGATCAGGTACGAAGCTTTTCCAAGAGCCC 708
Query 457 AAATGGACGATGTACTGCAACGGGAGAAAGTGCGGTTACGCTGTGTCACGTGGCGGGGCG 516
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 709 AAATGGACGATGTACTGCAACGGGAGGAAGTGCGGCTACGCTGTGTCACGTGGCGGCGCG 768
Query 517 TGTACTGACACGGATTGGCGCGTGTTGAACACGGTCTCTAGGGTTACTGTTGGAGCCGGA 576
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 769 TGTACTGATACAGATTGGCGCGTGTTGAACACGGTATCTAGGGTTACTGTTGGAGCCGGA 828
Query 577 GTTATTCCGACGCCGAAGACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTT 636
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GTTATTCCGACGCCGAAAACTATTGATGACGTGTCCGGTGTTGGTAGTGGAACGGAGCTT 888
Query 637 GGGGAGCTGTTGTATATGAGAGGAAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAG 696
|| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 889 GGTGAGTTGTTGTATATGAGAGGCAAATTTGAACGAGTCGTTGGGAGCCGTGACTCGGAG 948
Query 697 GCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GCGTTTTACATGATGAACCCGGACAAAAACGGAGGTCCAGAACTCAGTATTTTTCTTCTT 1008
Query 757 AGAATATAA 765
|||||||||
Sbjct 1009 AGAATATAA 1017
> AT3G25640.1 | Symbols: | Protein of unknown function, DUF617
| chr3:9333719-9334804 FORWARD LENGTH=1086
Length=1086
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 688 GACTCGGAGGCGTTTTACATGATGAACCC 716
|||||||||||||||||||||||||||||
Sbjct 780 GACTCGGAGGCGTTTTACATGATGAACCC 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37173268780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5