BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902176

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41945.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   562    1e-159


> AT2G41945.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: membrane; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT5G18250.1); Has 57 Blast 
hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:17509069-17512954 REVERSE 
LENGTH=934
Length=934

 Score =  562 bits (304),  Expect = 1e-159
 Identities = 325/335 (97%), Gaps = 2/335 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  57   ATGGGAACGAGACAAGTATACGAAGAGAAGCTTCGGCGTGGGAATCTTGATTATGATCCG  116

Query  61   ACTATGAATCCTGGTCTTGGTTCTGCTCGCTGTCCTCGTTGTCTTTCTCTCTTAAACCCT  120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  117  ACTATGAATCCTGGTCTTGGTTCTGCTCGGTGTCCTCGTTGTCTTTCTCTCTTAAACCCT  176

Query  121  AATTCTGAGAAAGGAGAGTGGATGATAACTCCAGTTTTGCACGATGCTGCTGCAGTGGCT  180
            ||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  177  AATTCAGAGAAAGGAGAGTGGACGATAACTCCAGTTTTACACGATGCTGCTGCAGTGGCT  236

Query  181  GGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  GGTTCTGGTATTGGTGGCTTGCTTAGTGCCGTCCATGCTTTCAATACAGGGATCCCCTAT  296

Query  241  CTTCAAAATCGGTTT-CCAGGGTCAAAGCGGCTCTCTTTTCTTGTTGGGGTTCCATTGCT  299
            ||||||||||||||| || |||||||||||||| || |||||||| ||||||||||||||
Sbjct  297  CTTCAAAATCGGTTTTCC-GGGTCAAAGCGGCTTTCCTTTCTTGTGGGGGTTCCATTGCT  355

Query  300  GCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAG  334
             ||||||||||||||||||||||||||||||||||
Sbjct  356  TCTAGTATATTCAGGTGTAGGGGCTGCTTTTGGAG  390


 Score =  235 bits (127),  Expect = 3e-61
 Identities = 133/136 (98%), Gaps = 0/136 (0%)
 Strand=Plus/Plus

Query  334  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  GGTTATGCACTTCCAAAGTTTGCTCAGCTGACAGTTACCTCGTATTATGCATCTTCAAGT  563

Query  394  GCTTCACATTATGGAATTTCTATGCTCACCCGCCGTATCGAAGAAGCTCATCTCTCTCGA  453
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  564  GCTTCACATTATGGAATTTCTATGCTAACCCGGCGTATCGAAGAAGCTCATCTCTCTCGA  623

Query  454  ACGCAGAAAGAAGAGG  469
            || |||||||||||||
Sbjct  624  ACTCAGAAAGAAGAGG  639



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5