BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902192
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42090.1 | Symbols: ACT9 | actin 9 | chr2:17556744-17558369 ... 1604 0.0
AT2G42100.1 | Symbols: | Actin-like ATPase superfamily protein... 946 0.0
AT2G42170.1 | Symbols: | Actin family protein | chr2:17577714-... 835 0.0
> AT2G42090.1 | Symbols: ACT9 | actin 9 | chr2:17556744-17558369
FORWARD LENGTH=1101
Length=1101
Score = 1604 bits (868), Expect = 0.0
Identities = 1029/1106 (93%), Gaps = 13/1106 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCCTATCGTGTGTGACAAGGGACATGGAATGGTCCAGGCGGGATTTGCAGGAGAC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1 ATGAAGCCTATCGTGTGTGACAAGGGACATGGAATGGTGCAGGCGGGATTTGCTGGAGAC 60
Query 61 GAAGCACCAAAGGTTGTGTTTCCATGCGTCGTGGGTCGTCCAAAAGATGGAATGAACCCG 120
|||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||
Sbjct 61 GAAGCACCAAAGGTTGTGTTTCCATGTGTCGTGGGTCGTCCAAGAGATGGATTGAATCCG 120
Query 121 AACGATTCTTATGTGGGA-AACGAAGCTCAAGCCAAGAGAGATATTCTTACA--T----A 173
||||| |||||||||||| || |||| ||| ||||| ||||||||||| ||| | |
Sbjct 121 AACGAATCTTATGTGGGAGAA-GAAGGTCATGCCAACAGAGATATTCTCACACTTAAAGA 179
Query 174 CCCAATGGAGCATGGTATCGTTAAAAATTGGGATGACATGGAGAAGATTTGGTACCATAC 233
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 180 CCCAATGGAGCATGGTATCGTTAACAATTGGGATGACATGGAGAAGATTTGGCACTATAC 239
Query 234 TTTCTACAACGAGCTACGTGTGGATCCTAAAGAACACCCTGTGCTTCTCACTGAAGCTCC 293
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 240 TTTCTACAACGAGCTACGTGTGGATCCTGAAGAACACCCTGTACTTCTCACTGAAGCTCC 299
Query 294 TTTTAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGAGCTTTGATGT 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTATAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTGAGAGCTTTGATGT 359
Query 354 TCCTGCCATGTACGTGTCCATTCAATCTGTTCTTTATCTCTATTCCAGTGGTCGTACCAC 413
|||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTGCTATGTACGTCTCCATGCAATCTGTTCTTTATCTCTATTCCAGTGGTCGTACCAC 419
Query 414 AGGTGTTGTGTTGGATTTAGGAGACAGAGTGAGCCACACAGTTCCAGTATACGAAGGTTA 473
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 420 AGGTGTTGTGTTGGATTTAGGAGAGAGGGTGAGCCACACAGTTCCAGTATACGAAGGTTA 479
Query 474 CGCACTCCCACACGGTATACTGCGTCTGGACCTAGGAGGCCGTGACCTAACTGACTACCT 533
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 CGCACTCCCACACGGTATACTTCGTCTAGACCTTGGAGGCCGTGACCTAACTGACTACCT 539
Query 534 CATAGAAATCATGGCCGAACGTGGCTACACATACACCTCATCCGCCGAGCGTGAGATAGT 593
||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 540 CATAGAAATCATGACCGAACGTGGCTACACATACACCACATCCGCCGAGCGGGAAATAGT 599
Query 594 CCGAGACATCAAAGAGAAGCTTTGTTACATAGCTCTCGACTACGAGCAAGAAATGGAGAA 653
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 600 CCGAGACATCAAAGAGAAGCTTTGTTACGTAGCACTCGACTACGAGCAAGAAATGGAGAA 659
Query 654 GGCAACAAAGGGCTGGGCAATCGATAAAACCTACGAGCTTCCCGATGGTCAAGTGATCAC 713
| |||||||||| ||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 660 GACAACAAAGGGTTGGACAATCGATAAAACCTACGTGCTTCCCGATGGTCAAGAGATCAC 719
Query 714 GCTAGAAGCCGAGAGATTGATCATGTGCCCTGAGGTTCTTTTCCAGCCGTCTTTGCTAGG 773
| |||||||||||||||| ||||||||| ||||||||||||||||||||| || | ||
Sbjct 720 GATAGAAGCCGAGAGATT---CATGTGCCCCGAGGTTCTTTTCCAGCCGTCTGTGATCGG 776
Query 774 AAAGGAATCTTGTGGTATTCACGAGGCTACTCGCAATTCGATCTTGAAGTGTCCAGTTGA 833
||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 777 AAAGGAATCTTCTGGTATTCACGAGGCGACTCGCAATTCCATCTTGAAGTGTCCTGTTGA 836
Query 834 TACGAGGAGGGATCTGTTTGGTAACATTTTGATGACTGGTGGCTCAACGATGTTCCATGG 893
||||||||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||
Sbjct 837 TACGAGGAGGGATATGTATGGTAACATTTTGATGACTGGTGGCACGACGATGTTACATGG 896
Query 894 GATTAAAGAAAGGATGACCAAAGAGATCACTGCACTTGTACCGTCAAGTATGAAAGTTAA 953
|||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||||||
Sbjct 897 GATTAAAGAAAGAATGACCAAAGAGCTAAATGCACTTGTACCGTCGAGTATGAAAGTTAA 956
Query 954 AATTG-ATGTTCCTCTGGAGAGTAAGTGTAGTGTTTGGAGTGGAGGCTCCGTTTTGGCTT 1012
| ||| | ||||||| ||| ||| ||||||||||||||| |||||||||| |||||||||
Sbjct 957 AGTTGTA-GTTCCTCCGGAAAGTGAGTGTAGTGTTTGGATTGGAGGCTCCATTTTGGCTT 1015
Query 1013 CTCTAAGCACCTTTCATCAGATGTGGATAACTAAGGATGAATATGAAGAACATGGAGCGG 1072
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTCTAAGCACCTTTCACCAGATGTGGATAACTAAGGATGAATATGAAGAACATGGAGCGG 1075
Query 1073 CGATTGTTCACAGTAAATGCTTCTAA 1098
||||||||||||| |||||| |||||
Sbjct 1076 CGATTGTTCACAGAAAATGCGTCTAA 1101
> AT2G42100.1 | Symbols: | Actin-like ATPase superfamily protein
| chr2:17560211-17561945 FORWARD LENGTH=1137
Length=1137
Score = 946 bits (512), Expect = 0.0
Identities = 933/1129 (83%), Gaps = 58/1129 (5%)
Strand=Plus/Plus
Query 8 CTATCGTGTGTGACAA-GGGACATGGAATGGTCCAGGCGGGATTTGCAGGAGACGAAGCA 66
|||||||||||||||| || || |||||||||| |||||||||| || |||||||| |||
Sbjct 29 CTATCGTGTGTGACAATGGAAC-TGGAATGGTCAAGGCGGGATTCGCTGGAGACGATGCA 87
Query 67 CCAAAG-GTTGTGTTTCCATGCGTCGTGGGTCGT-C-C-A-A-A----A--GA---T-GG 110
|| ||| | |||||||||| |||| ||||||||| | | | | | | || | ||
Sbjct 88 CC-AAGAGCTGTGTTTCCAAGCGTTGTGGGTCGTCCACGACACAGGGGAGTGATGGTAGG 146
Query 111 AATGAACCCGAACGAT-TCTTATGTGGGAAACGAAGCTCAAGCCAAGAGAGATATTC-TT 168
|||| | ||| ||| ||| ||||||| ||||||||||||||| ||||| ||||| ||
Sbjct 147 AATGGATGAGAAGGATACCTT-TGTGGGAGACGAAGCTCAAGCCAGGAGAGGTATTCTTT 205
Query 169 -AC----ATACCCAATGGAGCATGGTATCGTTAAAAATTGGGATGACATGGAGAAGATTT 223
|| ||||||||| || || ||| | |||| |||||||||||||||||||||||||
Sbjct 206 CACTTAAATACCCAATCGAACACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGATTT 265
Query 224 GGTACCATACTTTCTACAACGAGCTACGTGTGGATCCTAAAGAACACCCTGTGCTTCTCA 283
|| |||||||||| ||||| ||||| ||| |||| ||| ||||||||||| | |||||||
Sbjct 266 GGCACCATACTTTTTACAATGAGCTGCGTTTGGAACCTGAAGAACACCCTATTCTTCTCA 325
Query 284 CTGAAGCTCCTTTTAACCCTAAA-GCCAATCGTGAGAAA-ATGACTCAGATCATGTTTGA 341
||||||||||| ||||||| ||| | ||||||||| ||| ||||||||||||||||||||
Sbjct 326 CTGAAGCTCCTCTTAACCC-AAAGGTCAATCGTGA-AAAGATGACTCAGATCATGTTTGA 383
Query 342 GAGC-TTTGATGTTCCT-GCCATGTA-CGT-GTCCATTCAATCTGTTCTTTATCTCTATT 397
| | |||| | ||||| | ||||| | || ||||| | ||||| | ||||||||
Sbjct 384 G-TCATTTGCTTTTCCTAG-TATGTATATTGGT--ATTCAGGCCGTTCTCTCTCTCTATT 439
Query 398 CCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGACAGAGTGAGCCACACAGTTC 457
|||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||
Sbjct 440 CCAGTGGTCGTACCACAGGTATTGTGTTGGATTCAGGAGATGGTGTGAGCCACACAGTTC 499
Query 458 CAGTATACGAAGGTTACGCACTCCCACACG-GTATAC-TGCGTCTGGACCTAGGAGGCCG 515
|| | ||||||||||| |||||||| || | | || | ||||||| || |||| ||||||
Sbjct 500 CAATCTACGAAGGTTATGCACTCCCGCATGCG-AT-CTTGCGTCTAGATCTAGCAGGCCG 557
Query 516 TGACCTAACTGACTACCTCATAG-AAATCATGGCCGAACGTGGCTACACATACACCTCAT 574
||||||||| || || || | | |||||||| ||||||||||||||||||||| |||
Sbjct 558 TGACCTAACCGAGTATCTGA-CGAAAATCATGATGGAACGTGGCTACACATACACCACAT 616
Query 575 CCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTCTCGACT 634
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 617 CCGCCGAGCGTGAGATAGTCCGAGACATCAAAGAGAAGCTTTGTTACATAGCTGTTGACT 676
Query 635 ACGAGCAAGAAATGGAGAAGGCAACAAAGGGCTGGGCAATCGATAAAACCTACGAGCTTC 694
|||||||||||||||||||||| |||| | ||| ||||||||||| ||||||||||||||
Sbjct 677 ACGAGCAAGAAATGGAGAAGGCTACAACGAGCTCGGCAATCGATAGAACCTACGAGCTTC 736
Query 695 CCGATGGTCAAGTGATCACGCTAGAAGCCGAGAGATTGATCATGTGCCCTGAGGTTCTTT 754
| |||||||||||||||||| ||| ||| |||||||| || |||||||||||||||||
Sbjct 737 CGGATGGTCAAGTGATCACGATAGGAGCTGAGAGATT---CAGGTGCCCTGAGGTTCTTT 793
Query 755 TCCAGCCGTCTTTGCTAGGAAAGGAATCTTGTGGTATTCACGAGGCTACTCGCAATTCGA 814
||||| |||||||| | || | |||| ||| ||||||||| ||| | ||| ||||||||
Sbjct 794 TCCAGACGTCTTTGATTGGCATGGAAACTTCTGGTATTCATGAGACGACTTACAATTCGA 853
Query 815 TCTTGAAGTGTCCA-GTTGATACGAGGAGGGATCTGTTTGGTAACATTTTGATGACTGGT 873
|| |||||||| | || |||| |||| |||| ||| ||| |||||| || ||| ||||
Sbjct 854 TCATGAAGTGTG-ATGTGGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGTGGT 912
Query 874 GGCTCAACGATGTTCCATGGGATTAAAGAAAGGATGACCAAAGAGATCACTGCACTTGTA 933
||| | |||||||||| |||||| ||| ||||||| ||||||||||| ||| |||| |
Sbjct 913 GGCACGACGATGTTCCCGGGGATTGCAGATAGGATGAACAAAGAGATCAATGCGCTTGCA 972
Query 934 CCGTCAAGTATGAAAGTTAAAA-TTGATGT-TCCTCTGGAGAGTAAGTGTAGTGTTTGGA 991
||| | |||||||| | ||||| ||| || ||||| || || || | ||||||||||
Sbjct 973 CCGCCTAGTATGAA-GATAAAAGTTG-TGGCTCCTCCCGAAAGGAAATATAGTGTTTGG- 1029
Query 992 GT-GGAGGCTCCGTTTTGGCTTCTCTAAGCACCTTT-CATCAGATGTGGATAACTAAGGA 1049
|| ||||||||| || ||||||||||||||| |||| || | ||||||||| ||||| |
Sbjct 1030 GTTGGAGGCTCCATTCTGGCTTCTCTAAGCAGCTTTGCACC-GATGTGGATTACTAAAGC 1088
Query 1050 TGAATATGAAGAACATGGAGCGGCGATTGTTCACAGTAAATGCTTCTAA 1098
||| ||||| ||||| |||| ||||||||||||||| |||||||| |||
Sbjct 1089 TGAGTATGACGAACAGGGAGGGGCGATTGTTCACAGGAAATGCTTTTAA 1137
> AT2G42170.1 | Symbols: | Actin family protein | chr2:17577714-17580392
FORWARD LENGTH=1402
Length=1402
Score = 835 bits (452), Expect = 0.0
Identities = 916/1129 (81%), Gaps = 76/1129 (7%)
Strand=Plus/Plus
Query 8 CTATCGTGTGTGACAA-GGGACATGGAATGGTCCAGGCGGGATTTGCAGGAGACGAAGCA 66
|||||||||||||||| || || ||||||| || |||| |||| ||| ||||| || |||
Sbjct 134 CTATCGTGTGTGACAATGGAAC-TGGAATGATCAAGGCAGGATATGCTGGAGAAGATGCA 192
Query 67 CCAAAG-GTTGTGTTTCCATGCGTC-GTGGGTCGT---CCA-A-A----A--GA---T-G 109
|| ||| |||||| ||||| || | ||||||||| ||| | | | || | |
Sbjct 193 CC-AAGTGTTGTG-TTCCAAGC-ACTGTGGGTCGTCCACCACATACGGGAGGGATGGTAG 249
Query 110 GAATGAACCCGAACGA-TTCTTATGTGGGAAACGAAGCTCAAGCCAAGAG-AG-ATA-TT 165
||||||| |||||| || || ||||||| |||| ||| |||||| ||| | ||| ||
Sbjct 250 GAATGAATGAGAACGATTTATT-TGTGGGAGACGACGCTGAAGCCAGGAGCGGTATACTT 308
Query 166 ---CTT-ACATACCCAATGGAGCATGGTATCGTTAAAAATTGGGATGACATGGAGAAGAT 221
||| || |||||||||||||| ||| | |||| |||||||||||||||||||||||
Sbjct 309 ACACTTGAC-TACCCAATGGAGCACGGTGTTGTTAGCAATTGGGATGACATGGAGAAGAT 367
Query 222 TTGGTACCATAC-TTTCTACAACGAGCTACGTGTGGATCCTAAAGAACACCCTGTGCTTC 280
|||||||||||| ||| |||| ||||||||||||| |||| ||||||||||||||||||
Sbjct 368 TTGGTACCATACGTTT-TACAGTGAGCTACGTGTGGCTCCTGAAGAACACCCTGTGCTTC 426
Query 281 TCACTGAAGCTCCTTTTAACCCTAAAGCCAATCGTGAGAAAATGACTCAGATCATGTTTG 340
|||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||
Sbjct 427 TCACTGAAGCTCCTCTTAACCCGAAAGCCGATCGTGAGAAGATGACTCAGATCATGTTTG 486
Query 341 AGAGC-TTTGATGTTCCT-GCCATGTA-CGT-GTCCATTCAATCTGTTCTTTATCTCTAT 396
||| | |||| ||||||| | ||||| | || || || | | ||| | ||| ||
Sbjct 487 AGA-CATTTGCTGTTCCTAG-TATGTATATTGGT--ATGCAGGCCGCTCTCTCCCTCCAT 542
Query 397 TCCAGTGGTCGTACCACAGGTGTTGTGTTGGATTTAGGAGACAGAGTGAGCCACACAGTT 456
|||||||||||||||||||| ||||||||||| |||||| | |||||| ||| ||||
Sbjct 543 GCCAGTGGTCGTACCACAGGTACTGTGTTGGATTCAGGAGATGGTGTGAGCTACATAGTT 602
Query 457 CCAGTATACGAAGGTTAC-GCACTCCCACACGGTATAC-TGCGTCTGGACCTAGGAGGCC 514
||| | |||||||||| | ||||||||||| | || | |||| || || ||| |||||
Sbjct 603 CCAATCTACGAAGGTT-CAGCACTCCCACATGCAAT-CTTGCGGCTAGATTTAGCAGGCC 660
Query 515 GTGACCTAACTGACTACCTCATAG-AAATCATGGCCGAACGTGGCTACACATACACCTCA 573
|| ||||||| |||||||||| | |||||||| |||||||| | |||| ||
Sbjct 661 GTCACCTAACCAACTACCTCAT-GAAAATCATGATGGAACGTGG-----C-TACA---CA 710
Query 574 TCCGCCGAGCGTGAGATAGTCCGAGACATCAAAG-AGAAGCTTT-GTTACATAGCTCTCG 631
||||||||||||||| |||||||||||||||||| | || ||| ||||||||||||| |
Sbjct 711 TCCGCCGAGCGTGAGGTAGTCCGAGACATCAAAGAACAA--TTTGGTTACATAGCTCTTG 768
Query 632 ACTACGAGCAAGAAATGGAGAAGGCAACAAAGGGCTGGGCAATCGATAAAACCTACGAGC 691
||||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||
Sbjct 769 ACTACGAGCAAGAAATGGAGAAGGCTACAAAGAGTTCGGCAATCGATAGAACCTACGAGC 828
Query 692 TTCCCGATGGTCAAGTGATCACGCTAGAAGCCGAGAGATTGATCATGTGCCCTGAGGTTC 751
|||| |||||||||||||||||| ||| ||| |||||| | ||| ||||||||||||||
Sbjct 829 TTCCAGATGGTCAAGTGATCACGATAGGAGCTGAGAGA-T--TCAGGTGCCCTGAGGTTC 885
Query 752 TTTTCCAGCCGTCTTTGCTAGGAAAGGAATCTTGTGGTATTCACGAGGCTACTCGCAATT 811
||||||||||||||||| | |||| |||| ||| ||||||||| ||| ||| |||||
Sbjct 886 TTTTCCAGCCGTCTTTGATTGGAATGGAAACTTCTGGTATTCATGAGAAGACTTACAATT 945
Query 812 CGATCTTGAAGTGTCCA-GTTGATACGAGGAGGGATCTGTTTGGTAACATTTTGATGACT 870
| ||| |||||||| | | ||||| |||| |||| ||| ||| |||||| || ||| |
Sbjct 946 CAATCATGAAGTGTG-ATGATGATATAAGGAAGGATTTGTATGGAAACATTGTGTTGAGT 1004
Query 871 GGTGGCTCAACGATGTTCC-ATGGGATTAAAGAAAGGATGACCAAAGAGATCACTGCACT 929
||||| | |||||||||| | |||||| |||| ||||||||||||||||||| ||| ||
Sbjct 1005 GGTGGGACGACGATGTTCCGA-GGGATTGAAGAGAGGATGACCAAAGAGATCAATGCGCT 1063
Query 930 TGTA-CCG-TCAAGTATGAA-AGTTAAAATTGATGTTCCTCTGGAGAGTAAGTGTAGTGT 986
|| | ||| | || ||||| | ||||||||| || ||| | ||| || || | ||||||
Sbjct 1064 TGCAGCCGCT-AA-TATGAGGA-TTAAAATTGTTGCTCCCCCGGAAAGGAAATATAGTGT 1120
Query 987 TTGGAGTGGAGGCTCCGTTTTGGCTTCTCTAAGCACCTTTCATCAGATGTGGATAACTAA 1046
||||| |||||||||| ||||||||||||||||||| | | | ||||||||||| |||||
Sbjct 1121 TTGGATTGGAGGCTCCATTTTGGCTTCTCTAAGCACATATGAACAGATGTGGATTACTAA 1180
Query 1047 GGATGAATATGAAGAACATGGAGCGGCGATTGTTCACA-GTAAATGCTT 1094
| ||| ||||||||| ||||| |||| |||||||||| | ||||||||
Sbjct 1181 AGCTGAGTATGAAGAAAATGGACCGGCCATTGTTCACACG-AAATGCTT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5