BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902199
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20050.1 | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alp... 243 1e-63
> AT3G20050.1 | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha
subunit | chr3:6998238-7002404 REVERSE LENGTH=2082
Length=2082
Score = 243 bits (131), Expect = 1e-63
Identities = 198/229 (86%), Gaps = 10/229 (4%)
Strand=Plus/Plus
Query 1 ATGTCGATCTCCGCTCAAAATCCGGATATTTTCGGCGATAGACAATCCGGTCAAGATGAT 60
|||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 139 ATGTCGATCTCCGCCCAAAATCCGGATATTTCCGGCGATAGACAATCCGGCCAAGATG-T 197
Query 61 T-GTACTCAGGAA-GTGATGGCTTGCCAAGATGTTTCAAATATTGCTAAGACCTCACTCG 118
| ||||||| ||| ||||||||||| |||| |||||| ||||||| |||||||||||| |
Sbjct 198 TCGTACTCA-GAACGTGATGGCTTGTCAAGCTGTTTCTAATATTGTTAAGACCTCACTTG 256
Query 119 GTCCTGTCGGACTCGATC-GGATGGGT-GCGGATGATATTGGTGACGAGACCATTGA-AA 175
|||| ||||| ||||| | ||| | | | ||||||||||||||| | ||| ||| | ||
Sbjct 257 GTCCCGTCGGCCTCGA-CAAGAT-GTTGGTGGATGATATTGGTGATGTGACTATT-ACAA 313
Query 176 CTGACGGTGCTACTATTCTTAGGATGTTGGAGGTCGAACAGCCAGCTGC 224
||| |||||||||||||||||||||||||||||||| || || |||||
Sbjct 314 ATGATGGTGCTACTATTCTTAGGATGTTGGAGGTCGAGCACCCTGCTGC 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5