BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902223

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42365.1 | Symbols:  | other RNA | chr2:17641784-17645835 RE...   135    1e-31


> AT2G42365.1 | Symbols:  | other RNA | chr2:17641784-17645835 
REVERSE LENGTH=1224
Length=1224

 Score =  135 bits (73),  Expect = 1e-31
 Identities = 77/79 (97%), Gaps = 0/79 (0%)
 Strand=Plus/Plus

Query  180  AGATGAAGCTTGCAACTTTAGTAACAACGCAGCTGTTACTTCACTGAATCCTAGTCAAGG  239
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  828  AGATGAAGCTTGCAACTTTAGTAACAACGCAGCTGTTACTTCTCTCAATCCTAGTCAAGG  887

Query  240  AACATGCAAGTTTCCTTCA  258
            |||||||||||||||||||
Sbjct  888  AACATGCAAGTTTCCTTCA  906



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5