BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902224
Length=2160
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42370.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2811 0.0
> AT2G42370.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G58110.2);
Has 205 Blast hits to 191 proteins in 60 species: Archae -
3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses
- 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr2:17643334-17645533
FORWARD LENGTH=2148
Length=2148
Score = 2811 bits (1522), Expect = 0.0
Identities = 1967/2177 (90%), Gaps = 50/2177 (2%)
Strand=Plus/Plus
Query 1 ATGGATTCTCCTGCGAATCCTTTTAAACCTCGAGAGCAAGGTACAATCACTATTTCGCGA 60
|||||| |||| |||||||||||| | |||||||||||| |||| | ||||||| ||
Sbjct 1 ATGGATCCTCCGGCGAATCCTTTTGCATCTCGAGAGCAAGATACAGTAACTATTTTAAGA 60
Query 61 AACCTGATCAAGGAAGCTAAC-GTGGAAGAAGAAGTCTGTGAAGCTTCAGAGACACATTC 119
|||||||| ||| ||||| || |||| |||||||||| |||||||||||||||||||||
Sbjct 61 AACCTGATTAAGCAAGCT-ACTTTGGAGGAAGAAGTCTCTGAAGCTTCAGAGACACATTC 119
Query 120 TGGTCCGGACAAAATCCGAATTTTAGAGTCAGTGTCGGACGAAATGAGGAAATCGCAGGA 179
|| |||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 120 TGTTCCGAACAAAATCAGAATTTTAGAGTCAGTGTCGGACGAAATGAGGAAAT--C---- 173
Query 180 GGCTGAGGAGGTAGATGGTAGTGATCAGAAACTAGAGGTGTCGATTGAGGAAGACCAGAT 239
|| |||| | | | |||||||||||||||| | || | || |||||||||| ||||
Sbjct 174 -GC--AGGA-G-A-ACGGTAGTGATCAGAAAC---A-GT-T-GAGTGAGGAAGACGAGAT 221
Query 240 TGATACTATGGATTCAAAAGCCATGAGCTTTTCTTTTAATTGTCACGGTGGTGGGCCAAA 299
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 222 TGATATTCTGGATTCAAAAGCCATGAGCTTTTCTTTTAGTTGTCACGGTGGTGGGCCAAA 281
Query 300 GCGGAAGaaaaaaaaCGATAAGAAACGTAAGCAACAAGAAGAGAAGTCGAAGAAGAAGCT 359
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 282 GCGGAAGAAATGTAACGATAAGAAACGTAAGCAGCAAGAAGAGAAGTCTAAGAAGAAGCT 341
Query 360 TAAGGTACTTGTTCAAACCTTAAAGCTCGTACCTTTCAAGCCATTTAAAACCTTAGATTT 419
|||||||||||| |||| |||||||| ||||||||||||||||| |||||| |||||||
Sbjct 342 CAAGGTACTTGTTGAAACATTAAAGCTTGTACCTTTCAAGCCATTAAAAACCCTAGATTT 401
Query 420 TGCTCGTTATGAGAGTGTCTTGAAGACTCTTGG-TCTGTGGGATTTTGTGCATTTGGAAT 478
|||| ||||||||||| |||| |||||||| || | ||||||||||||||||||||||||
Sbjct 402 TGCTTGTTATGAGAGTCTCTTAAAGACTCTCGGAT-TGTGGGATTTTGTGCATTTGGAAT 460
Query 479 TTGATCAGGATATGGATTATGGTCTTGTGGCTCAACTTATTGCTTACTATAGT-CCAGAG 537
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| | ||
Sbjct 461 TTGATCAGGATATGGATTATGATCTTGTGGCTCAACTTATAGCTTCCTATAGTGCTGGA- 519
Query 538 GGTAGGTGCAGTTATATAAACGGGTCTAGGATTAAACTTAGTCGTGCGGATTTGGCTCGA 597
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGTAAGTGCAGCTATATAAACGGGTCTAGGATTAAACTTAGTCGTGCGGATTTGGCTCGA 579
Query 598 GCTTTGAAGTTGCCTAATAAGAGAGAACGTGTTGTCATTCTAGATGAGGATAAAGAACTT 657
||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||
Sbjct 580 TCTTTGAAGTTGCCTAATAAGAAAGAACGTGTTGTCATTCTTGATGAGGATAAGGAATTT 639
Query 658 CTGGAATCAGATGAATTAATTAGTTTTGTT-AACGAAGTTGTCTCTAATTGGATGCTACT 716
|||||||||||||||| ||| ||| ||||| || || ||| |||||||||||||||||||
Sbjct 640 CTGGAATCAGATGAATCAATCAGTGTTGTTGAA-GATGTTATCTCTAATTGGATGCTACT 698
Query 717 GCATTGTGATGATGCGTGGATGATGCCAGATAAAGTGGTGGAGTGGAAGAAAAGTATAAA 776
||||||||||||||||||||||||||||||| |||||||||| |||| |||| |||||||
Sbjct 699 GCATTGTGATGATGCGTGGATGATGCCAGATGAAGTGGTGGAATGGATGAAAGGTATAAA 758
Query 777 GGAAAAGCAATTGGATAAGCTTGACTGGGCTGGATTGATGTGGTTCATGGTTGAGAAAGA 836
| ||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||
Sbjct 759 GAAAAAGCAATTGGATAAGCTGGACTGGGCTGGACTGATGTGGTTTATGGTTGAGAAAGA 818
Query 837 GTTGAAAGCGGAGCCTCCACTCGGGGATTGTTTCTATGCGTCGCATCTGCAGATGGTGAT 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 819 GTTGAAAGCGGAGCCTCCACTCGGGGATTGTTTCTATGCGTCGCATTTGCAGATGGTCAT 878
Query 897 TAGATCACAGAAAATAGATCTATTTAGGGAGCA-GGATTTGAAGGTAAAGGATGATATTG 955
||||||||||||||||||||| |||| |||| | ||||||||||||||||||||||||||
Sbjct 879 TAGATCACAGAAAATAGATCTGTTTAAGGAG-AGGGATTTGAAGGTAAAGGATGATATTG 937
Query 956 CTGCTTTGAATCTAAGAATGGATGATGGAGCTAGTGACTCAAAGGAAGAAAAGTGTGTGG 1015
|||||||||||||| |||||||||||||||| | |||||||||| ||||||| |||||||
Sbjct 938 CTGCTTTGAATCTAGGAATGGATGATGGAGCCACTGACTCAAAGAAAGAAAACTGTGTGG 997
Query 1016 AGGAAGGTATGATCGAACTGAATCTTGGGAAAGTGACTGTGTCTGAAATGGCTGCTGAGG 1075
||||| ||| || | |||||||||||||| |||||| |||||| |||||||||||| | |
Sbjct 998 AGGAAAGTACGACCAAACTGAATCTTGGGCAAGTGATTGTGTCCGAAATGGCTGCT-ACG 1056
Query 1076 A-GGAGCATCATCATGAGGAACAAGCAATGGATCTTGAGGAAAACAAGGAACAGCCAAAG 1134
| ||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 1057 ATGGAGCTTTATCATGAGGAACAAGCAATTGATCTTGAGGAAAACAAGGAACAACCAATG 1116
Query 1135 GATCTTCAGGAAACCAAGGAAGAAGGAGATGGAAAATGG-CTTTTG--AG--ATATGAAA 1189
|||||| ||||| ||||||||||||||||| | |||||| | | || ||||||||
Sbjct 1117 GATCTTAAGGAAGCCAAGGAAGAAGGAGAT-G-AAATGGAATGGAGACAGCCATATGAAA 1174
Query 1190 GGAACAGG-ACAGGACATAAGAAAGTGGGAGAGTAT--GA-ACTTGAAGATGAAATTGAG 1245
|||| || ||| |||||| ||||||||||||| || || |||||||||||||||||||
Sbjct 1175 AGAAC-GGAACAAGACATAGGAAAGTGGGAGAGAATGAGATACTTGAAGATGAAATTGAG 1233
Query 1246 AAAGATGGAGAAAAGC-ACAACGGAGGGTTTTTGTTGTTTCCAAACGGTGAAACACTACA 1304
|||||||||||||||| | || ||||||||||| ||||||| |||||| ||||||||||
Sbjct 1234 AAAGATGGAGAAAAGCAAGAA-GGAGGGTTTTTATTGTTTCGGAACGGTAAAACACTACA 1292
Query 1305 CCAGGAAAATCTGATGTTGGGAGATACATCTCCATTAGGTTATAATTCTGAGCTACAGAT 1364
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
Sbjct 1293 CCAGGAAAATCTGATGTTGGGAGATACATCTACATTAGGTTATAATTCTGGGCTACAGGT 1352
Query 1365 TCATGGCAATTCTACTGGTGATTTCATGAG-ATCTAGGGCTGTCATGCATATGGTTCCAG 1423
|||||||| ||||||| |||||||| || | | |||| ||||||||||||||||||||||
Sbjct 1353 TCATGGCAGTTCTACTTGTGATTTCCTG-GCACCTAGAGCTGTCATGCATATGGTTCCAG 1411
Query 1424 GTCGTTCTCACTTTAGGAATGACAACAAGAGAGAGATTGATCACGAGAATGATATTTCGT 1483
|||||||||| ||| ||||||| |||||||||||| ||| |||||||||||||||||| |
Sbjct 1412 GTCGTTCTCATTTTGGGAATGATAACAAGAGAGAGTTTGGTCACGAGAATGATATTTCAT 1471
Query 1484 ACCATTTTGATAACCCTGCTAGTACTAAGAGGTTGAAGACACCATATTGGGATGACAAGC 1543
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1472 ACCATTTTGATAACCCTGCTAGTACTAAGAGGTTGAAGACACCATCTTGGGATGACAAGC 1531
Query 1544 CAGTTCCTTTTGACGTGTGCATGGAGCAGATTAAGCACTTGGCAGATAAGGCTAAGTTAT 1603
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 CAGTTCCTTTTGACATTTGCATGGAGCAGATTAAGCACTTGGCAGATAAGGCTAAGTTAT 1591
Query 1604 CATATGCCGAGAAAGACCGAGCTTGTGGAGAATCGAATATGAGGGAACAGATGTTGCTTA 1663
|||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
Sbjct 1592 CATATGTCGAGAAAGACCAAGCTTGTGGAGAATCGAACATGAGGGAACAAATGTTGCAAA 1651
Query 1664 ATGAACTGCAAAGGAGGGAAGAAATAATTCAGCAATTGCAC-AAGAAAACTTACGAAGAG 1722
|||||||||||||||||||||| |||||||||||||||||| ||| ||| ||| ||||||
Sbjct 1652 ATGAACTGCAAAGGAGGGAAGACATAATTCAGCAATTGCACAAAG-AAAGTTATGAAGAG 1710
Query 1723 GAACACAAGAAGGATGTAGAGATCTATAAACTTGAGAATGAACTTCGTATGATGACAAGT 1782
|||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1711 CTACACAAGAAGAACGTAGAGATCTATAAGCTTGAAAATGAACTTCGTATGATGACAAGT 1770
Query 1783 GTATTAGGCGGGTACCAGAAAGCTTTAAAAGAAACACAGAAGGCATGTAGAAAGCACAGG 1842
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1771 GTATTAGCCTGGTACCAGAAAGCTTTAAAAGAATCACAGAAGGCATGTAGAAAGCACAGG 1830
Query 1843 AAAGTTTGCCCTTTGCGTGATAAACCGATATACAGAGATGTTAAAGGTACTGGAGGTTTA 1902
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1831 AAAGTTTGCCCTTTGCTTGATAAACCGATATACATAGATGTTAAAGGTACTGGAGGTTTA 1890
Query 1903 GTATTGAGCACTGCTGAAATCGAGAAGCTAAGATTGAAAGAAGAAAAAGAAGAGGGGATG 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1891 GTATTGAGCACTGCTGAAATCGAGAAGCTAAGATTGAAAGAAGAAAAAGAAGAGGGGATG 1950
Query 1963 AGACGAGCTCTAATAGAGAGACAAGTAGAAGAATTTGGAAGCCTCTGGATAAAAGAATAT 2022
||||||| ||||||||||||||||||| ||||| ||||||| |||||||| ||||| |||
Sbjct 1951 AGACGAGTTCTAATAGAGAGACAAGTAAAAGAAGTTGGAAGTCTCTGGATTAAAGAGTAT 2010
Query 2023 GAAGTGAACCTTaaaaaaaaaGTAGAGCTGCTTGACGAGAAGCTGCCCGGGTTCCAAAAT 2082
|||||||||||||| |||||||||||| ||||||||| ||||||| ||||| ||||||
Sbjct 2011 GAAGTGAACCTTAAGAAAAAAGTAGAGTTGCTTGACGGGAAGCTGATTGGGTTTCAAAAT 2070
Query 2083 AAGGTGAACCTCTTGAAAGAGACAGTTTCAAGACGTGTAA-CTATACCTGGAAGATTTGA 2141
||| |||| ||||||||||| ||| |||||||||| | || ||||| ||| |||||||||
Sbjct 2071 AAGATGAAGCTCTTGAAAGAAACAATTTCAAGACGCG-AATCTATATCTGCAAGATTTGA 2129
Query 2142 TGCAACATCAGACACTT 2158
|||||||||| ||||||
Sbjct 2130 TGCAACATCAAACACTT 2146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107127963030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5