BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902234

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31180.1 | Symbols:  | Class II aminoacyl-tRNA and biotin sy...   200    6e-51


> AT4G31180.1 | Symbols:  | Class II aminoacyl-tRNA and biotin 
synthetases superfamily protein | chr4:15155879-15159589 FORWARD 
LENGTH=2126
Length=2126

 Score =  200 bits (108),  Expect = 6e-51
 Identities = 123/130 (95%), Gaps = 1/130 (1%)
 Strand=Plus/Plus

Query  191   AAAAGACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATTCTTAAGGAAGCTGGTGTGG  250
             |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1416  AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG  1474

Query  251   AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC  310
             || |||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| 
Sbjct  1475  AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT  1534

Query  311   TGGAAAAGTA  320
             ||||||||||
Sbjct  1535  TGGAAAAGTA  1544


 Score =  191 bits (103),  Expect = 4e-48
 Identities = 142/161 (88%), Gaps = 2/161 (1%)
 Strand=Plus/Plus

Query  4     TTCAGAGAAAATTTGCTATCCAAGGATTTTGTT-AATATCCACACACCGAAACTCTTGGC  62
             ||||||||||| || | ||  ||| ||||||||  | ||||||||||| |||||  ||||
Sbjct  1009  TTCAGAGAAAAATTACGATTTAAGAATTTTGTTGGA-ATCCACACACCAAAACTGATGGC  1067

Query  63    CGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACCAAGGACAGCCTGCTTG  122
              |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct  1068  TGGTAGTAGTGAAGGAGGTTCTGCTGTATTTAGGTTGGAATACAAAGGGCAACCTGCTTG  1127

Query  123   TCTAGCTCAGTCTCCTCAACTTCACAAGCAAATGACAATAT  163
             |||||||||||||||||| || |||||||||||| ||||||
Sbjct  1128  TCTAGCTCAGTCTCCTCAGCTCCACAAGCAAATGGCAATAT  1168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5