BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902237

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42470.1 | Symbols:  | TRAF-like family protein | chr2:17679...  89.8    2e-17


> AT2G42470.1 | Symbols:  | TRAF-like family protein | chr2:17679887-17685187 
REVERSE LENGTH=2697
Length=2697

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 85/102 (83%), Gaps = 5/102 (5%)
 Strand=Plus/Plus

Query  39   GAATCAAAAACAGACTAGTTTCACGTTTGAGATAGATAACTTCTCGGAAAAGGAAGCTGA  98
            ||||||  | ||||| |||||||||||||||||||||||||||| ||| |||| || || 
Sbjct  81   GAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGC  140

Query  99   GATATCGTCTTCTATATTCG-AATGCGGCAGATGCAAATGGT  139
            |||||| ||  ||||||||  || ||||| ||||| ||||||
Sbjct  141  GATATC-TC--CTATATTCATAA-GCGGCGGATGCGAATGGT  178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5