BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902237 Length=507 Score E Sequences producing significant alignments: (Bits) Value AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679... 89.8 2e-17 > AT2G42470.1 | Symbols: | TRAF-like family protein | chr2:17679887-17685187 REVERSE LENGTH=2697 Length=2697 Score = 89.8 bits (48), Expect = 2e-17 Identities = 85/102 (83%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 39 GAATCAAAAACAGACTAGTTTCACGTTTGAGATAGATAACTTCTCGGAAAAGGAAGCTGA 98 |||||| | ||||| |||||||||||||||||||||||||||| ||| |||| || || Sbjct 81 GAATCATGAGCAGACGAGTTTCACGTTTGAGATAGATAACTTCTTGGAGAAGGGAGATGC 140 Query 99 GATATCGTCTTCTATATTCG-AATGCGGCAGATGCAAATGGT 139 |||||| || |||||||| || ||||| ||||| |||||| Sbjct 141 GATATC-TC--CTATATTCATAA-GCGGCGGATGCGAATGGT 178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24212858854 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5