BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902240
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42460.1 | Symbols: | TRAF-like family protein | chr2:17676... 1155 0.0
> AT2G42460.1 | Symbols: | TRAF-like family protein | chr2:17676399-17679293
REVERSE LENGTH=1375
Length=1375
Score = 1155 bits (625), Expect = 0.0
Identities = 733/785 (93%), Gaps = 8/785 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATTGATTTGCAG-AGTACTTTTAGCTGGAAGATAGAAAACTTCTCCGAAAGGAA 59
|||||||| ||||||||| || ||||||| ||||||||||||||| ||||||| ||||||
Sbjct 50 ATGGAGATAGATTTGCAGAAG-ACTTTTACCTGGAAGATAGAAAATTTCTCCGGAAGGAA 108
Query 60 ATTTCCAATAACGTCTACTGCGTTCTCAAGCGGTGGCTGCGAATGGTATGTTCTAATTCA 119
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 109 ATTTCCAATAACGTCTACTGTGTTCTCAAGCGGTGGCTGCGAATGCTATGTTCTAATTCG 168
Query 120 TCCCAAGGGAGATGGCTTTGATGATTACTTGTCTCTGTATCTATGCGTTGCGAACCCTAA 179
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 169 TCCCAAGGGAGATGGCTTTGAAGATTACTTATCTCTGTATCTATGCGTTGGGAACCCTAA 228
Query 180 ATCACTGCAACCTGGATGGAAAAGGCGAGCCAGTTTGAACTTCATTATATTGAATCAATC 239
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 229 ATCATTGCAACCTGGATGGAAAAGGCGAGCCAGTTTGCACTTCATTGTATTGAATCAATC 288
Query 240 AGGCAAAGAGGTCCATAGAACATCTGAAAGATATGGCTTGTTTGG-CGCTGAGATCCCTG 298
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 289 AGGCAAAGAGGTCCATAGAACATCTGAAAGATATGGCTTGTTTGGTC-CTGAGATCCCTG 347
Query 299 GCTGGGGTTTTCGAACGGCGTTGCCTCTTACCAAGTTACAGGATAAAGAGTTGTTAGAGA 358
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 348 GCTGGGGTTTTCGAACGGCGTTGCCTCTTACCAAGTTACAAGATAGAGAGTTGTTGGAGA 407
Query 359 ACAACACTCTCATCATTGAAGTCTACATTAAAGTTACTGAAGTTGTTCATGAAGGAGATG 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 408 ACAACACTCTCTTCATTGAAGTCTACATTAAAGTTACTGAAGTTGTTCATGAAGGGGATG 467
Query 419 AAACTAGGAAGGATATGTTAGATTTCAGAGGTTTCAATGTTCTTTCTTCTCAAATTACTT 478
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 468 AAACAAGGAAGGATATGTTAGATTTCAAAGGTTTCAATGTTCTTTCTTCTCAAATTGCTT 527
Query 479 CAGTGAGCCAC-ATTTTTGCCAAGTACCCAAACTTTGCGGCA-GATATCAAACCAAAAAG 536
| ||||||| | || || || ||||||||||| ||||||| | ||||||||||||| |||
Sbjct 528 CGGTGAGCC-CGATATTCGCTAAGTACCCAAAATTTGCGG-ATGATATCAAACCAACAAG 585
Query 537 CAAAGCCGTGAAGACAGCATACCTGAAGATTCTCCTCGGCCTTATCAAGACAGCAAACAA 596
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 586 CAAAGCGGTGAAGACAGTATACCTGAAGATTCTCCTCGGCCTTATCAAGACAGTAAACAA 645
Query 597 GCCTCCAGAGAGCTTCTCAGAGACTGAACTAATCAAGGCTTATAGCAGTTTAATTGATCT 656
||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 646 GCCTCCAGAGATCTTTTCAGAGACTGAACTAATCAAGGCTTATAGCAGCTTAATTGATCT 705
Query 657 AATGGAAGTGGGCTTTAAGCTGGACTGGTTGAAGTCAAAGCTTGATGAGGTTTCCTTGGA 716
||||||||||||||||| | || | |||||||||||||||||||||||| |||||||||
Sbjct 706 AATGGAAGTGGGCTTTAGGGTGAAGTGGTTGAAGTCAAAGCTTGATGAGATTTCCTTGGC 765
Query 717 GAGGAAGATAAAAGTTGATGCTGACGCGGCTCGGGTCCAAGAACTTGAGGAAAAGGTCAA 776
|||||||| ||||||||||||||| ||||||||||||||||| || |||| |||||||||
Sbjct 766 GAGGAAGAAAAAAGTTGATGCTGATGCGGCTCGGGTCCAAGAGCTCGAGGGAAAGGTCAA 825
Query 777 GAATC 781
|||||
Sbjct 826 GAATC 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5