BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902246
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685... 220 3e-56
> AT2G42480.1 | Symbols: | TRAF-like family protein | chr2:17685805-17689928
REVERSE LENGTH=2309
Length=2309
Score = 220 bits (119), Expect = 3e-56
Identities = 354/461 (77%), Gaps = 42/461 (9%)
Strand=Plus/Plus
Query 11 TGTGGAATCAAAAGCCGAGTTTCAGGTTTGAGATAGATAACTTCTCGGAGAAGGAA-AT- 68
||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||
Sbjct 79 TGTGGAATCAAAAGCCGTGTTTTAGGTTTGAGATAGATAACTTCTCGGAGAAGAAAGATG 138
Query 69 TGCCATGGTGTCAAAGGTATTCGTGAGTGGCGGACACGAATGGTATC-TCGGCGTTTATC 127
|| || | ||| |||| |||||||||||| ||| |||||||| || | | | ||||
Sbjct 139 TG--ATAGCGTCTAAGGCATTCGTGAGTGGAGGATGCGAATGGT-TCCTTTACCTCTATC 195
Query 128 CGATGG-ACGAAGATTATCCTTA-TGATAATTACTTGTCTGTGTACCTG-CACGCTACAA 184
||| || || | || | | ||| |||| || || ||||| |||| ||| | || | |||
Sbjct 196 CGAAGGGAC-A-GAGT--C-TTAATGATGATCACATGTCTTTGTATCTGTC-CGTTGCAA 249
Query 185 ATTCTAAA-CCATTGGGAAGTGGATGGCAAA-GGACTGCTAATTTTTACTTTCTTCTTT- 241
|| |||| || ||||||||||||||| ||| ||| |||||| |||||||| || || |
Sbjct 250 ATAGTAAATCC-TTGGGAAGTGGATGG-AAACGGAGTGCTAAATTTTACTT-CT-CTGTG 305
Query 242 -TGAATCAATCCGACCAAGTGCTCTATAGATCATA-TGTT--C-AAGAGCACA-TA-GAT 294
||||| |||| ||| ||| ||||| |||||| | | || | |||| | | | |
Sbjct 306 CTGAATGAATCTGACAAAGAACTCTACAGATCA-ACTATTAGCCAAGAATTCTGTCTG-T 363
Query 295 TTT-CATGCAGAGTCCCT-GATTTGGGGTATCCAAAAGACCTTGCCTCTTAGCTTTTTTC 352
||| | | ||| | | || | | ||||||||| |||| | |||||||||||| |||
Sbjct 364 TTTGCGTTCAG-G-CTCTAGCCT-GGGGTATCCGAAAGGCTTTGCCTCTTAGCAAGTTTG 420
Query 353 AGGAAGAAGGGTTTCTGGAGAACGACAAACTCATTGTTGAAGTCTACATTCAAA--TTGT 410
||||| |||||||| ||||||| ||||||||||| |||||||||||||| |||| || |
Sbjct 421 AGGAAAAAGGGTTTTTGGAGAAGGACAAACTCATCGTTGAAGTCTACAT-CAAAAATTTT 479
Query 411 AGAATCTTTTGATGGAGAGAGA-GGAGATGTATCAGAGAAG 450
||| | | |||||||| || |||| ||||||| |||||
Sbjct 480 -GAAGCAGTGGATGGAGA-AGGCGGAGGTGTATCAAAGAAG 518
Score = 191 bits (103), Expect = 2e-47
Identities = 258/328 (79%), Gaps = 29/328 (9%)
Strand=Plus/Plus
Query 1469 TGGAATGGTTGAAGTCAAAGCTTGA-TGAGGTTTCCTTGAAGAGGAAGAAAGCAGATGCT 1527
|||| || ||||| ||||||||||| | | ||||| | |||| |||||||||||||||
Sbjct 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051
Query 1528 G--A----T--G-TCCAACAACTCGATGAACGTCTTAAGAATCTTGAGCAGATGAAATTG 1578
| | | | |||||| ||| || |||||| ||||||| ||||||| |||| |||||
Sbjct 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111
Query 1579 GACTTCAAGCTAGACTGTTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 1638
| | | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2112 G------A-C--GA---TTTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159
Query 1639 TCAGATGATG-TTGAT-GGTTCTCGAGTCAAAGAAATGGAAGGAC-GCATCAAGAATCTT 1695
||||| |||| || || ||| |||| ||| | || | || ||| || ||||||| |||
Sbjct 2160 TCAGACGATGCTT-ATAGGT-CTCGGGTCTACCAACTCGA-GGAATGCTTCAAGAACCTT 2216
Query 1696 GAGATGATGGTGTCAGATCTCAAAGTTAAAATGGACAAGGAGGAGGCCAAATCTTTTGCT 1755
||| ||||||||| ||| |||||||| || |||||||| | ||| |||||||| || |
Sbjct 2217 GAGCTGATGGTGTTGGATTTCAAAGTTGAACTGGACAAGAAAAAGGACAAATCTTGTGAT 2276
Query 1756 GATGGTTTTTTGTTGATCGACGAGGTTG 1783
||||| ||||||||| |||||||| |||
Sbjct 2277 GATGGATTTTTGTTGGTCGACGAGTTTG 2304
Score = 147 bits (79), Expect = 5e-34
Identities = 234/304 (77%), Gaps = 30/304 (10%)
Strand=Plus/Plus
Query 701 TGGAATGGTTGAAGTCAAAGCTTG-GTAAGGTTTCCTTGAAGAGGAAGAAACCAGATGCT 759
|||| || ||||| |||||||||| || | ||||| | |||| |||||| ||||||||
Sbjct 1993 TGGACTGTTTGAAATCAAAGCTTGAGTTA-GTTTCGATAAAGAATAAGAAAGCAGATGCT 2051
Query 760 GAT--GTC-C--A-ACAA--A-TTGATGAACGTGTTAAG-AA--TGAGATGATGAAATTG 807
||| ||| | | ||| | | || |||||||||||| || |||| ||||| |||||
Sbjct 2052 GATAGGTCTCGGATCCAACGACTAGAGGAACGTGTTAAGAAACTTGAGCTGATGGAATTG 2111
Query 808 GACTTCAAGCTGGACTGCTTGAAGACAAAGATTGAGGAGGTTTCCTTGGAGAGGAAGAAA 867
| | | || | |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2112 G------A-C--GA-T--TTGAAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAA 2159
Query 868 TCAGATGATGCTGAT-GGTTCTCGAGTCAAAGAAATGGAGGGACGCATCAAGAATCTTGA 926
||||| |||||| || ||| |||| ||| | || | |||| | || ||||||| |||||
Sbjct 2160 TCAGACGATGCTTATAGGT-CTCGGGTCTACCAACTCGAGGAATGCTTCAAGAACCTTGA 2218
Query 927 GATGATGGTGTCAGATCTCAAAGCTAAACTGGGAAAAGAGAA-GGCCATATCTTCTGATG 985
| ||||||||| ||| |||||| | |||||| | |||| || || || ||||| |||||
Sbjct 2219 GCTGATGGTGTTGGATTTCAAAGTTGAACTGG-ACAAGAAAAAGGACAAATCTTGTGATG 2277
Query 986 ATGG 989
||||
Sbjct 2278 ATGG 2281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5