BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902253
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr... 604 2e-172
AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709... 431 3e-120
> AT2G42540.2 | Symbols: COR15A, COR15 | cold-regulated 15a | chr2:17711032-17712092
REVERSE LENGTH=755
Length=755
Score = 604 bits (327), Expect = 2e-172
Identities = 391/422 (93%), Gaps = 4/422 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCGGA 60
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 127 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCACTGGTATGGCTTCTTCTTTCCACAGCGGA 186
Query 61 GCCAAGCAGA-CCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 119
|||||||||| | | | | || ||||||||||||||||||||||||||||||||||||||
Sbjct 187 GCCAAGCAGAGCAGCT-TCGGCGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTCGT 245
Query 120 TTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGATGA 179
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 246 TTCTCAACGCAAGAAGTCGTTGATCTACGCCGCTAAAGGTGACGGCAACATCCTCGATGA 305
Query 180 CCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCGTT 239
||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 306 CCTCAACGAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAGGCATT 365
Query 240 GGCAGATGGCGAGAAAGC-AAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGATA 298
|||||||| |||||||| |||| |||||||||||||||||| |||||||| ||||||||
Sbjct 366 AGCAGATGGTGAGAAAGCGAAAG-ACTACGTTGTTGAAAAAAACAGTGAAACCGCAGATA 424
Query 299 CATTGGGTAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGATGAGAAAGGAAAAGAAGCTG 358
|||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||||||| |
Sbjct 425 CATTGGGTAAAGAAGCTGAGAAAGCTGCGGCGTATGTGGAGGAGAAAGGAAAAGAAGCCG 484
Query 359 CGAACAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCACAAAGT 418
| |||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 485 CAAACAAGGCGGCAGAGTTCGCGGAGGGTAAAGCAGGAGAGGCTAAGGATGCCACAAAGT 544
Query 419 AG 420
||
Sbjct 545 AG 546
> AT2G42530.1 | Symbols: COR15B | cold regulated 15b | chr2:17709036-17709945
REVERSE LENGTH=653
Length=653
Score = 431 bits (233), Expect = 3e-120
Identities = 364/426 (85%), Gaps = 13/426 (3%)
Strand=Plus/Plus
Query 1 ATGGCGATGTCTTTCTCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAGCG-- 58
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 ATGGCGATGTCTTTATCAGGAGCTGTTCTCAGTGGCATGGGTTCTTCTTTCCACAACGTA 132
Query 59 G-AGCCAAGCAGACCGGTATTGGGGCTGTCAGAGTCGGCCAGAAAACTCAGTTCGTCGTC 117
| ||| ||||||| ||| |||| | |||||||| |||| ||| | | || ||||||||
Sbjct 133 GGAGCAAAGCAGAGTGGTGTTGGTACCGTCAGAGTTGGCCGGAAGAGTGAGCTCGTCGTC 192
Query 118 GTTTCTCAGCGCAAGAAGTCGTTGATCTACGCCGCTAAAAGTGACGGCAACATCCTCGAT 177
||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 193 GTTGCTCAGCGCAAGAAGTCGTTGATATACGCCGTTAAAAGTGACGGCAACATCCTCGAT 252
Query 178 GACCTCAACCAGGCCACAAAGAAAGCTTCAGATTTCGTGACGGATAAAACAAAAGAAGCG 237
||||||||| | ||||||||||||||||| ||||||||||||||||| || || || ||
Sbjct 253 GACCTCAACGAAGCCACAAAGAAAGCTTCTGATTTCGTGACGGATAAGACGAAGGAGGCC 312
Query 238 TTGGCAGATGGCGAGAAAGCAAAGGACTACGTTGTTGAAAAAACCAGTGAAAACGCAGAT 297
||||| |||||||||||| |||| |||||| ||||||| ||||||| |||| | || ||
Sbjct 313 TTGGCGGATGGCGAGAAAACAAAAGACTACATTGTTGAGAAAACCATTGAAG-C-CA-AT 369
Query 298 -ACATTGGG--TAAAGAAGCTGAGAAAGCTTCGGAGTACGCGGA-TGAGAAAGGAAAAGA 353
| | || | | | |||||| ||||||||| ||| || | | | |||||||||||||||
Sbjct 370 GAAACTGCGACTGAGGAAGCTAAGAAAGCTTTGGATTATGTG-ACTGAGAAAGGAAAAGA 428
Query 354 AGCTGCGAA-CAAGGCCGCTGAGTTCGCAGAGGGTAAAGCAGGAGACGCTAAGGATGCCA 412
||| | ||| |||||| |||||||||| |||||||||||||| ||| |||||| ||||||
Sbjct 429 AGCCG-GAAACAAGGCGGCTGAGTTCGTAGAGGGTAAAGCAGAAGAGGCTAAGAATGCCA 487
Query 413 CAAAGT 418
||||||
Sbjct 488 CAAAGT 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19906028604
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5