BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902275
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-... 1009 0.0
AT2G42720.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Ric... 348 5e-95
> AT2G42730.1 | Symbols: | F-box family protein | chr2:17787454-17791582
REVERSE LENGTH=2407
Length=2407
Score = 1009 bits (546), Expect = 0.0
Identities = 621/658 (94%), Gaps = 2/658 (0%)
Strand=Plus/Plus
Query 1 ACTAAGCAAAACCGGAGTGAGATTCACCA-AAATTTCATGGCTTTCGTCGACAAATTGCT 59
|||||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||
Sbjct 365 ACTAAGCAAAACCGGATTGAGATTCA-CAGAAATTACATGGCTTTCGTTGACAAATTGCT 423
Query 60 AGATCCGCAACGCGGTTCTTCTATAAAGAAGCTCACTCTAAAGAGTCATGTCGGTGTTCG 119
|||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 424 AGATACGCAACGTGGTTCTTCTATAAAGAAGCTCACTCTAAAGAGTCATGTTGGTGTTCG 483
Query 120 AGGTGGCACTGACTCATCCCGCATTCAAACTTGGATTTGCAACGTTCTTGACCATGGTGT 179
|||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 AGGTGGCACTGATTCATCTCGCATTCAAAGTTGGATTTGCAACGTTCTTGACCATGGTGT 543
Query 180 TGTGGATCTTGATATGTTCATCACTTTAAAAGGAAAATCTCCACCAGTGCCTTCGTTGAT 239
| ||||||||||| ||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 544 TATGGATCTTGATGTGTTCATTACTTTAAAAGGAAAATCTCCACCAGTGCCTGCAATGAT 603
Query 240 CTTCAAGAGCAAGACATTGGTTAAGCTGAGACTAGGACGTGGTTTTACAATCAAGCCTTC 299
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 604 CTTTAAGAGCAAGACATTGGTTAAGCTGAGAGTAGGACGTGGTTTTACAATCAAGCTTTC 663
Query 300 TCAGGATGTTTCTCTTCCTATGCTTAGGACATTATTTCTTGACTCGGTTAATTTTGTTGG 359
||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 664 TCAAGATGTTTCTCTTCCTTTGCTTAGGACATTATGTCTTGACTCAGTTAATTTTGTTGG 723
Query 360 AGGTCATAATGTTGTTGGAACTCTTATATCTCGTTGTCCTGTTCTCGAAGAATTGGTTGT 419
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 724 AGGTCATAATGTTGTTGGAACTCTTATATCTCGCTGTCCTGTTCTCGAAGAACTGGTTGT 783
Query 420 TGAGGAGCGGCGATGTGTAGATTGGACTTGTTCTGTGTCTTCTACATCTCTAAAGAGACT 479
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 784 TGAGGAGCGGCGATGTGTAGATTGGACTTGTTCCGTGTCTTCTCCATCTCTAAAGAGACT 843
Query 480 ACACATCCGATTTGATCGCAAGTTTACAAGTATTTCATTAGATGCTCCTAATCTTGTCTA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 844 ACACATCCGATTTGATCGCAAGTTTACTAGTATTTCATTAGATGCTCCTAATCTTATCTA 903
Query 540 CTATAAACATTCTGGTTATGTTTTGGGTAAGTATCCAAATGTTAAGTTGGATTCCCTCAT 599
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 904 CTACAAACACTCTGGTTATGTTTTGGGTAAGTATCCTAATGTTAAGTTGGATTCCCTCAT 963
Query 600 CGAAGCTAGACTCAATCTTCGGATGGATGAAAGAAGAATGCAGGGAGTTAGAAATGGA 657
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 964 CGAAGCTAGACTCAATCTTCGGATGGATGAAACAAGAATGGTGGGAGTAAGAAATGGA 1021
> AT2G42720.1 | Symbols: | FBD, F-box, Skp2-like and Leucine Rich
Repeat domains containing protein | chr2:17785409-17787421
FORWARD LENGTH=1786
Length=1786
Score = 348 bits (188), Expect = 5e-95
Identities = 378/467 (81%), Gaps = 23/467 (5%)
Strand=Plus/Plus
Query 183 GGATCTTGATATGTTCATCACTTTAAAAGGAAAATCTCCACCAGTGCCTTCGTTGATCTT 242
|||||||||| | || |||||||| |||||||||| || || ||||||| |||||||||
Sbjct 580 GGATCTTGATCTCTTTATCACTTTCAAAGGAAAATTTCAACTTGTGCCTTTGTTGATCTT 639
Query 243 CAAGAGCAAGACATTGGTTAAGCTGAGACTAGGACGTGGTTTTACAATCAAGCCTTCTCA 302
||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 640 CAAGAGCAATACACTGGTTAAGCTGAGACTAGGACGTGGTTTTACAATCAAGCTTTGTCA 699
Query 303 GGA---TGTTTCTCTTCCTATGCTTAGGACATTATTTCTTGACTCGGTTAATTTTGTTGG 359
|| ||||| |||||||||||||| ||| |||| ||||||| | ||| |||||| |||
Sbjct 700 TGAAAATGTTTATCTTCCTATGCTTAAGACTTTATGTCTTGACACTGTTGATTTTGATGG 759
Query 360 AGGTCATAATGT-TGTTGGAACTCTTATATC-TCGTTGTCCTGTTCTCGAAGAATTGGTT 417
|| ||||||||| | ||| ||||||| | || |||||| ||| | || ||||||||||||
Sbjct 760 AGATCATAATGTCT-TTGAAACTCTTCT-TCCTCGTTGCCCTCTGCTTGAAGAATTGGTT 817
Query 418 GTTGAGGAGCGGCGATGTGTAG-ATTGGACTTGTTCTGTGTCTTCTACATCTCTAAAGAG 476
||||||| | |||||| | | | ||| | |||||||||||||| |||||||||||||
Sbjct 818 CTTGAGGATCAGCGATG-GAAACAATGGTGTGGTTCTGTGTCTTCTCCATCTCTAAAGAG 876
Query 477 ACTACACATCCGATT-TGATCGCAAGTTTACAAGTATTTCA-TTAGATGCTCCTAATCTT 534
||||| ||||||||| | || | | || |||||| || |||| ||| ||||
Sbjct 877 ACTACGCATCCGATTCTT-TCATA--TCCCCAT-TATTTCGCTT-GATGTTCCCGGTCTT 931
Query 535 GTCTACTATA-AACATTCTGGTTATGTTTTGG-GTAAGTATCCAAATGTTAAGTTGGATT 592
||||||| | ||| |||| || || ||| || | |||||| |||||||||| |||||||
Sbjct 932 GTCTACT-TGGAACTTTCTTGT-ATATTTGGGAGCAAGTATGCAAATGTTAACTTGGATT 989
Query 593 CCCTCATCGAAGCTAGACTCAATC-TTCGGATGGATGAAAGAAGAAT 638
||||| | || ||||||||||||| || || |||| ||| ||||||
Sbjct 990 CCCTCGTTGAGGCTAGACTCAATCATTGGG-TGGAAGAAC-AAGAAT 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5