BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902301
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42960.1 | Symbols: | Protein kinase superfamily protein | ... 1725 0.0
AT3G59110.1 | Symbols: | Protein kinase superfamily protein | ... 854 0.0
AT1G01540.2 | Symbols: | Protein kinase superfamily protein | ... 106 7e-22
> AT2G42960.1 | Symbols: | Protein kinase superfamily protein
| chr2:17868597-17870630 REVERSE LENGTH=1485
Length=1485
Score = 1725 bits (934), Expect = 0.0
Identities = 986/1011 (98%), Gaps = 3/1011 (0%)
Strand=Plus/Plus
Query 1 ATGTCACCTGAGAGTTCGTTAAACGCTGAAATGTCCAAGAAGATATCATTTTTTGGTTTA 60
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCACCTGAGAGTTCTTTAAACGCTGAAATGTCCAAGAAGATATCATTTTTTGGTTTG 60
Query 61 AAGGGGTTGAAGTTGTGGGTATGGGTATGTTTGGTAGTTGGAGTATTCATTGTTATGATT 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAGGGTTTGAAGTTGTGGGTATGGGTATGTTTGGTAGTTGGAGTATTCATAGTTATGATT 120
Query 121 CTCTGCATCTTGTCTCTATGGATCACATTCCGCCGGAAATCTAGAAGATCTTCAAGCAAG 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 121 CTCTGCATCTTGTCTCTATGGATCACATTCCGTCGGAAATCTAGAAGGTCTTCAAGCAAG 180
Query 181 TTTCCTTTCAACCAAATACCACATGTGTCCAAAGATATCAGAGTCGACAGGGCT-GGTGT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 181 TTTCCTTTCAACCAAATACCACATGTGTCCAAAGATATCAGAGTCGACAGGGCTGGGT-T 239
Query 240 TCAGAATCCTCACCCTGAAAGTTTATATATAGAAATGAATGATAAATCCACCGGAAAAAC 299
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCAGAATCCTCACCCCGAAAGTTTATATATAGAAATGAATGATAAATCCACTGGAAAAAC 299
Query 300 GATGATGTCTCACTTGGGAAGAACCAAGTCTAGTGATAATGATACTTTGAGTCAGTGTAG 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 300 GATGATGTCTCACTTGGGAAGAACCAAGTCTAGTGATAATGACACTTTGAGTCAATGTAG 359
Query 360 CTCTGTCAATCACCATGAGAGAGCTTGTAGTTCTCATTCTGGTGAAGAAGGAGGCTTTGG 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCTGTGAATCACCATGAGAGAGCTTGTAGTTCTCATTCTGGTGAAGAAGGAGGCTTTGG 419
Query 420 AAGTGCTGGGAGACAGTATGGAGGAGGACCTGTAACAGCATCTCCTTTGGTTGGTTTACC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTGCTGGGAGACAGTATGGAGGAGGACCTGTAACAGCATCTCCTTTGGTTGGTTTACC 479
Query 480 AGAAATATCCCATCTTGGTTGGGGACACTGGTTTACTCTTAGGGATCTTGAGCTAGCTAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 AGAAATATCCCATCTTGGTTGGGGACACTGGTTTACTCTTAGGGATCTTGAGCTAGCAAC 539
Query 540 CAACCGTTTTGCTGCAGTGAATGTGCTTGGAGAGGGTGGTTATGGAGTAGTTTATAGGGG 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAACCGTTTTGCTCCAGTGAATGTGCTTGGAGAGGGTGGTTATGGAGTAGTTTATAGGGG 599
Query 600 TAAACTTGTTAATGGTACCGAGGTTGCAGTAAAGAAGCTTCTGAACAATCTAGGGCAAGC 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TAAACTTGTTAATGGTACCGAGGTTGCTGTAAAGAAGCTTCTGAACAATCTAGGGCAAGC 659
Query 660 TGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTTCGACACAAGAATCTTGT 719
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 660 TGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGT 719
Query 720 TAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGGATGCTTGTTTATGAGTATGTTAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGGATGCTTGTTTATGAGTATGTTAA 779
Query 780 TAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTG 839
Query 840 GGAGGCACGGATGAAGATCATTACCGGTACTGCACAAGCGCTTGCTTACTTACATGAAGC 899
||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 840 GGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCGCTTGCTTACTTGCATGAAGC 899
Query 900 AATAGAACCAAAAGTGGTCCACAGAGACATAAGAGCAAGTAATATATTGATTGATGATGA 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 AATAGAACCAAAAGTGGTCCACAGAGACATAAAAGCAAGTAATATATTGATTGATGATGA 959
Query 960 GTTTAATGCAAAACTCTCTGACTTTGGGGTTAGCCAAGCTCTTGGACTCGG 1010
|||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GTTTAATGCAAAACTCTCTGACTTTGGG-TTAGCCAAGCTCTTGGACTCGG 1009
Score = 686 bits (371), Expect = 0.0
Identities = 411/430 (96%), Gaps = 4/430 (1%)
Strand=Plus/Plus
Query 1009 GGATATGTAGCACCAGAATATGCTAATACAGGTCTGTTAAACGAGAAGAGTGATATATAT 1068
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1048 GGATATGTAGCACCAGAATATGCTAATACAGGTCTTTTAAACGAAAAGAGTGATATATAT 1107
Query 1069 AGCTTTGGTGTCTTGCTTCTTGAAGCTGTAACTGGTCGAGATCCAGTTGATTATGGACGT 1128
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1108 AGCTTTGGTGTCTTGCTTCTTGAAGCTATAACTGGTCGAGATCCAGTTGATTATGGTCGT 1167
Query 1129 CCTGCTAATGAGGTGAATCTTGTTGAATGGCTAAAGATGATGGTCGGAACAAGAAGAGCA 1188
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1168 CCTGCTAATGAGGTGAATCTTGTTGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGCA 1227
Query 1189 GAGGAAGTTGTGGATCCAAGACTTGAACCTAGACCTAGTAAAAGTGCTTTGAAACGTGCA 1248
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GAAGAAGTTGTGGATCCAAGACTTGAACCTAGACCTAGTAAAAGTGCTTTGAAACGTGCA 1287
Query 1249 CTTTTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGAGTCAG 1308
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 CTCTTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGAGTCAG 1347
Query 1309 ATTGCTCGGATGCTTGAATCCGATGAACACCCTTTTCACAAGGAGAGGAGGAACAGAAAG 1368
|||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1348 GTTGCGCGCATGCTTGAATCTGATGAACACCCTTTTCACAAGGAGAGGAGGAACA-AAAG 1406
Query 1369 -AGCAGAACCGCGAGCATGGAGATTGTTGAGACCAAAGACGAATCTCTTGGACCTAGCGG 1427
|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1407 GAGCAAAACCGCGGGCATGGAGATTGTTGAGACCAAAGACGAATCTCTTGGTCCTAGTGG 1466
Query 1428 -TGCAGAGAC 1436
| |||||||
Sbjct 1467 CT-CAGAGAC 1475
> AT3G59110.1 | Symbols: | Protein kinase superfamily protein
| chr3:21854719-21858204 FORWARD LENGTH=2417
Length=2417
Score = 854 bits (462), Expect = 0.0
Identities = 862/1048 (82%), Gaps = 56/1048 (5%)
Strand=Plus/Plus
Query 1 ATGTCACCTGAGAGTTCGT-TAAACGCTGAAATGTCCAAGAAGATATCATTTTTTGGTTT 59
|||||| |||||||||| | | | ||||| ||||| |||||| | |||||||| |||||
Sbjct 522 ATGTCATCTGAGAGTTC-TCTGAGTGCTGACATGTCGAAGAAGGTCTCATTTTTAGGTTT 580
Query 60 AAAGGGGT-TGAAGTTGTGGGTA-TGGGTATGTTTGGTAGTTGG-AGTATTCATTGTTAT 116
|| |||| |||| |||||||| | | | ||||| |||||||| | ||| | ||| |
Sbjct 581 GAA-GGGTATGAAACTGTGGGTACT-GATTTGTTTAGTAGTTGGCA-CATTTGTAGTTTT 637
Query 117 GATTCTCTGCATCTTGTCTCTATGGATCACATTCCGCCGGAAATCTAGAAGATC-T-T-- 172
| || |||| || || ||||||||||| |||||||||||||||| | ||||| | |
Sbjct 638 GGTTTTCTGTATATTATCTCTATGGATTGCATTCCGCCGGAAATCCCGGAGATCATCTCA 697
Query 173 CAAGCAAGTTTCCTTTCAACCAAATACCACATGTGTCCAAAGATATCAGAG-T--CGACA 229
||||| ||| || |||| |||||||||| ||| | ||||||||||| | | || |
Sbjct 698 CAAGC-TGTTACCCTTCAGTCAAATACCACGCGTGGCGAAAGATATCAGGGTTGATGATA 756
Query 230 GGGCT-GGTGTTCAGAATCCTCACCCTGAAAGTTTATATAT-AGAAATGAATGATAAATC 287
| | | ||| |||| |||| | | ||||| ||||| ||| | ||||| |||||||||
Sbjct 757 GAGTTGGGT-TTCAAAATCAT-A--ATGAAAATTTATCTATCACAAATG-CTGATAAATC 811
Query 288 CACCG-GA-A-AAA--C------GATGATGTCTCACTTGGGAAGAACCAAGTCTAGTGAT 336
| | || | ||| | |||||||||| ||||||||||||| ||||||||||||
Sbjct 812 TA--GTGACAGAAACTCTGGGAAGATGATGTCTTACTTGGGAAGAACGAAGTCTAGTGAT 869
Query 337 AATGATACTTTGAGTCAGTGTAGCTCTGT-CAATCACCATGAGAGAGCTTGTAGTTCTCA 395
||||||| | | ||||| ||||||||||| | |||| |||||||||||||||||||||||
Sbjct 870 AATGATAGTATAAGTCAATGTAGCTCTGTGC-ATCATCATGAGAGAGCTTGTAGTTCTCA 928
Query 396 TTCTGGTGAAGAAGGAGGCTTTGGAAG-TGCTGGGAGAC---A----GTAT-GGA-GGAG 445
||||||||||| ||| ||||||| || |||| |||||| | ||| | || |
Sbjct 929 CTCTGGTGAAGATGGAAGCTTTGG-AGCTGCTTGGAGACAAAATTCCCTATCACAGGGCG 987
Query 446 GACCT-GTAACAGCATCTCCTTTGGTTGGTTTACCAGAAATATCCCATCTTGGTTGGGGA 504
| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 988 G-GCTAGTAACAGCATCTCCTTTGGTTGGTTTGCCAGAAATATCTCATCTTGGTTGGGGA 1046
Query 505 CACTGGTTTACTCTTAGGGATCTTGAGCTAGCTACCAACCGTTTTGCTGCAGTGAATGTG 564
|||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||
Sbjct 1047 CACTGGTTTACTCTTAGGGATCTTCAGCTAGCCACCAACCGTTTTGCTGCTGAAAATGTA 1106
Query 565 CTTGGAGAGGGTGGTTATGGAGTAGTTTATAGGGGTAAACTTGTTAATGGTACCGAGGTT 624
| || ||||||||||||||||||||||||| ||||| ||| | || |||| || |||
Sbjct 1107 ATCGGTGAGGGTGGTTATGGAGTAGTTTATAAGGGTAGACTCATCAACGGTAATGATGTT 1166
Query 625 GCAGTAAAGAAGCTTCTGAACAATCTAGGG-CAAGCTGAGAAGGAATTTCGGGTAGAAGT 683
|| |||||||||||||| |||||||| ||| || |||||||||||||| ||||| |||||
Sbjct 1167 GCTGTAAAGAAGCTTCTTAACAATCT-GGGACAGGCTGAGAAGGAATTCCGGGTTGAAGT 1225
Query 684 TGAGGCTATTGGTCATGTTCGACACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGA 743
|||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||
Sbjct 1226 TGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTAAGGCTTCTAGGATATTGCATAGA 1285
Query 744 GGGAGTTCATCGGATGCTTGTTTATGAGTATGTTAATAGTGGTAACTTAGAACAATGGCT 803
||| ||| || |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1286 GGGTGTTAATAGGATGCTTGTTTATGAGTATGTGAATAGTGGTAACTTAGAACAATGGCT 1345
Query 804 ACATGGAGCAATGCGGCAA-CATGGAAATCTCACTTGGGAGGCACGGATGAAGATCATTA 862
||||||||| ||| || || || | | ||||||||||||||| || ||||| ||| ||
Sbjct 1346 ACATGGAGCCATG-GGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTG 1404
Query 863 CCGGTACTGCACAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTGGTCCACA 922
|||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1405 TTGGTACTGCGCAGGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTAGTCCACA 1464
Query 923 GAGACATAAGAGCAAGTAATATATTGATTGATGATGAGTTTAATGCAAAACTCTCTGACT 982
||||||||| |||||| ||||| ||||||| ||||| || |||||||| || ||||| |
Sbjct 1465 GAGACATAAAAGCAAGCAATATCCTGATTGACGATGACTTCAATGCAAAGCTTTCTGATT 1524
Query 983 TTGGGGTTAGCCAAGCTCTTGGACTCGG 1010
||||| || ||||||||||| |||||||
Sbjct 1525 TTGGG-TTGGCCAAGCTCTTAGACTCGG 1551
Score = 414 bits (224), Expect = 1e-114
Identities = 350/410 (85%), Gaps = 12/410 (3%)
Strand=Plus/Plus
Query 1009 GGATATGTAGCACCAGAATATGCTAATACAGGTCTGTTAAACGAGAAGAGTGATATATAT 1068
|||||||| ||||| |||||||||||||||||||| || || ||||||||||| || |||
Sbjct 1590 GGATATGTCGCACCCGAATATGCTAATACAGGTCTATTGAATGAGAAGAGTGACATCTAT 1649
Query 1069 AGCTTTGGTGTCTTGCTTCTTGAAG-CTGTAACTGGTCGAGATCCAGTTGATTATGGACG 1127
|||||||||||| |||| || | || || ||||||| ||||||||||||| |||| |||
Sbjct 1650 AGCTTTGGTGTCCTGCTGCTAG-AGACTATAACTGGAAGAGATCCAGTTGACTATGAACG 1708
Query 1128 TCCTGCTAATGAGGTGAATCTTGTTGAATGGCTAAAGATGATGGTCGGAACAAGAAGAGC 1187
||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1709 TCCAGCTAATGAGGTGAATCTGGTCGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGC 1768
Query 1188 AGAGGAAGTTGTGGATC-CAA-GACTTGAACCTAGACCTAG-TAAAAGTGCTTTGAAACG 1244
|| |||||||| || | ||| || |||| ||| ||| | || | ||||| |||||||
Sbjct 1769 TGAAGAAGTTGTTGA-CTCAAGGA-TTGAGCCTCCACC-CGCTACACGTGCTCTGAAACG 1825
Query 1245 TGCACTT-TTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGA 1303
||||||| || ||| |||| |||||||| |||||||||||| ||||||| |||| |||||
Sbjct 1826 TGCACTTCTT-GTTGCCCTGAGATGTGTGGATCCTGAAGCACAGAAACGGCCTAAAATGA 1884
Query 1304 GTCAGATTGCT-CGGATGCTTGAATCCGATGAACACCCTTTTCACAAGGAGAGGAGGAAC 1362
| ||| ||| | ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1885 GCCAGGTTG-TGCGGATGCTTGAATCCGATGAACACCCTTTTCGTGAGGAGCGGAGGAAC 1943
Query 1363 AGAAAGAGCAGAACCGCGAGCATGGAGATTGTTGAGACCAAAGACGAATC 1412
|||||||| ||||| ||||| |||||||||||||| |||| || |||||
Sbjct 1944 AGAAAGAGTAGAACAGCGAGTATGGAGATTGTTGAAACCACTGAGGAATC 1993
> AT1G01540.2 | Symbols: | Protein kinase superfamily protein
| chr1:195780-198684 FORWARD LENGTH=1920
Length=1920
Score = 106 bits (57), Expect = 7e-22
Identities = 240/325 (74%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 490 CATCTTGGTTGGGGAC-ACTGGTTTACTCTTAGGGATCTTG-AGCTAGCTACCAA-CCGT 546
|||||||| ||||| | | |||| |||||| || || |||| ||| || || || |
Sbjct 603 CATCTTGGATGGGGCCGA-TGGTATACTCTGAGAGAGCTTGAAGC-GGCCACGAATGGGC 660
Query 547 TTTGCTGCAGTGAATGTGCTTGGAGAGGGTGGTTA-TGGAGTAGTTTATAGGGGTAAACT 605
|||| || || |||||| | ||||| |||||||| ||| | || ||| | || | |
Sbjct 661 TTTG-TGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGA-TTGTGTATCGTGG-CATTT 717
Query 606 T-GTTAATGGTACCGAGGTTGCAGTAAAGAAGCTT-CTGAACAATCTA-GGG-CAAGCTG 661
| | |||| ||| | || || || ||||| ||| || ||||| || ||| ||||| |
Sbjct 718 TAACTGATGGAACCAAAGTCGCCGTCAAGAA-CTTGCTTAACAA--TAGGGGTCAAGCAG 774
Query 662 AGAAGGAATTTC-GGGTAGAAGTTG-AGGCTATTGGTC-ATGTTCGACACAAGAATCTTG 718
|||||||| ||| |||||||| | || | ||||| | | || ||||||||||||||||
Sbjct 775 AGAAGGAA-TTCAAAGTAGAAGTGGAAGTC-ATTGGGCGA-GTACGACACAAGAATCTTG 831
Query 719 TTAGGCTTTTAGGATATTGCATAGAGGGAGTTCAT-C-GGATGCTTGTTTATGAGTATGT 776
||||||||||||| |||||| | || || | ||| | ||||||| || ||||| | |||
Sbjct 832 TTAGGCTTTTAGGGTATTGCGTGGAAGGTG--CATACAGGATGCTCGTGTATGACTTTGT 889
Query 777 TAATAGTGGTAACTTAGAACAATGG 801
| | |||||| || || ||||||
Sbjct 890 CGACAATGGTAATTTGGAGCAATGG 914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72489586980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5