BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902317
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43120.1 | Symbols: | RmlC-like cupins superfamily protein ... 1554 0.0
> AT2G43120.1 | Symbols: | RmlC-like cupins superfamily protein
| chr2:17927264-17928984 FORWARD LENGTH=1154
Length=1154
Score = 1554 bits (841), Expect = 0.0
Identities = 928/970 (96%), Gaps = 5/970 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGCTGCAATAAACAGAGCAAATTCACTTGGAGGTTTGTTTTCATTTAAGTTTATC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 76 ATGAGAGCTGCAATAAACAGAGCAAATTCACTTGGAGGTTTGTTTTCATTTAGGTTTATC 135
Query 61 AGAAACATCAAATCAATGtcttcttcttcttcttcCCAAGATTTCGTATCAAGACCTGTT 120
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 136 AGAAACATCAAATCAATG---TCTTCTTCTACTTCCCAAGATTTCGTATCAAGACCTGTT 192
Query 121 ATCAAGAAAGTCTTCGCTAAGCTTCAGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATCAAGAAAGTCTTCGCTAAGCTTCAGAAAGAAGGCGATGGAGCCGTCGTTAGACGTGGC 252
Query 181 ATTTCCAGGAGCGAGCAGAAGTTATTAGATCCGTTCTTGATGCTAGATGAATTCTCCGTT 240
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 253 ATTTCCAGGAGTGAGCAGAAGTTGTTAGATCCTTTCTTGATGCTAGATGAATTCTCCGTT 312
Query 241 TCGCCTCCAGCTGGATTCCCTGACCATCCTCACAGAGGTTTTGAAACTGTTACATATGTA 300
|||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 313 TCGCCTCCAGCTGGCTTCCCTGATCATCCTCACAGAGGGTTTGAAACTGTTACATACGTA 372
Query 301 CTAGAGGGAGGAATCACTCACCAGGACTTCAAAGGTCATAAGGGTACAATCTATGCTGGT 360
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 373 CTAGAGGGAGGAATCACTCACCAAGACTTCAAAGGTCACAAGGGTACAATATATGCTGGT 432
Query 361 GATGTTCAGTGGATGACTGCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GATGTTCAGTGGATGACTGCAGGAAGAGGAATCATTCATTCTGAAATGCCTGAAGAAGAA 492
Query 421 GTTAACAAAGGTTTACAACTTTGGATCAATCTTTCCTCCAACGAGAAAATGATTGAGCCA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 493 GTCAACAAAGGTTTACAACTTTGGATCAATCTTTCCTCCAACGAGAAAATGATAGAACCA 552
Query 481 AACTACCAAGAACTGTCGCATTCAGACATACCAAAAACAGAACAAAACGGTGTTGAAGTC 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 553 AACTACCAAGAACTGTCGCATTCAGACATACCAAAAGCAGAACAAAACGGTGTTGAAGTC 612
Query 541 AAAGTCATAGCAGGAGAATCAATGGGAATTCAATCCCCTGTTTACACAAGAACACCTACA 600
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 613 AAAGTCATTGCAGGAGAATCAATGGGAATTCAATCACCTGTTTACACAAGAACACCTACT 672
Query 601 ATGTTTCTTGATTTCACTCTCCAACCAGGAGCTCAAATCCACCAGAACGTTCCCGAATCT 660
||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 673 ATGTTCCTCGATTTCACTCTCCAACCAGGAGCTCAAATCCACCAGAATGTTCCAGAATCT 732
Query 661 TGGAATGCGTTTGCTTACGTTCTAGAAAGCGGTGAAGGCGGTGGCGTTTTCGGTTCTTCG 720
||||| || ||||||||| ||||||| |||||||||||||| ||||||||| |||| |||
Sbjct 733 TGGAACGCATTTGCTTACATTCTAGAGAGCGGTGAAGGCGGCGGCGTTTTCAGTTCCTCG 792
Query 721 AACTCTTCCCCTGTTTCAGCCCACAACGTTGTGGTGTTCGGACCAGGGAATGATGGTGTT 780
|||||||| ||| || |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 793 AACTCTTCGCCTATTCCAGCACACAGTGTTGTGGTGTTCGGACCAGGGAATGATGGTGTT 852
Query 781 AGCGTGTGGAACAAGTCATCTTCAAAG-ATATTGAGGTTTGTGTTAATTGCTGGAGAACC 839
||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 853 AGCGTGTGGAACAAGTCATCTTCAAAGCA-ATTGAGGTTTGTGTTGATTGCTGGAGAACC 911
Query 840 GATTGGTGAACCGGTGGTTCAATACGGTCCGTTCGTGATGAATACTCAAGCTGAGATTGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 GATTGGTGAACCGGTGGTTCAATACGGTCCGTTCGTGATGAATACTCAAGCTGAGATTGA 971
Query 900 TATGACCATTGAAGATTATCACTATGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TATGACCATTGAAGATTATCACTATGGTAAGAATGGCTTCGAAATGGCCAAGTATTGGAG 1031
Query 960 GTCACAATGA 969
||||||||||
Sbjct 1032 GTCACAATGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5