BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902344

Length=906
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43375.1 | Symbols:  | other RNA | chr2:18017116-18018691 RE...   169    5e-41


> AT2G43375.1 | Symbols:  | other RNA | chr2:18017116-18018691 
REVERSE LENGTH=1576
Length=1576

 Score =  169 bits (91),  Expect = 5e-41
 Identities = 112/121 (93%), Gaps = 6/121 (5%)
 Strand=Plus/Minus

Query  316  AAAAGAACAAAAAATGTAGCTGCTTTTAATTTGGAGGAAGACATGAGAAGACATCAGATC  375
            ||||| || |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  481  AAAAG-AC-AAAACTGTAGCTGCTTTTAATTTAGAGGAAGACATGAGAAGACATCAGATC  424

Query  376  AAGACTGCCTCCAATCGTGATAAGAAGCTAAAAAATA-T--AGGCACCATGCAAAAG-TT  431
            ||||||||||||||||||||||||||||||| ||||| |  |||||||||||||||| ||
Sbjct  423  AAGACTGCCTCCAATCGTGATAAGAAGCTAATAAATAATGTAGGCACCATGCAAAAGGTT  364

Query  432  G  432
            |
Sbjct  363  G  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44256283507


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5