BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902367
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43570.1 | Symbols: CHI | chitinase, putative | chr2:1807622... 1308 0.0
> AT2G43570.1 | Symbols: CHI | chitinase, putative | chr2:18076224-18077463
REVERSE LENGTH=1027
Length=1027
Score = 1308 bits (708), Expect = 0.0
Identities = 795/836 (95%), Gaps = 10/836 (1%)
Strand=Plus/Plus
Query 13 GCTAAACCCACATCACGAAATGACCGATTTGCTCCTTTTC-TCACAACCCT-ATTGTTCC 70
|||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||| ||||
Sbjct 32 GCTAAACCCACATCACGAAATGACCGATTTGC-CCTTTTCTTCATAACCCTAATT-TTCC 89
Query 71 TAATCCTAACCGTTTCCAAACCGGTCGCCTCTCAGAACTGTGGCTGCGCCTCTGACTTCT 130
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 90 TGATCCTAACCGTTTCCAAACCGGTCGCCTCTCAAAACTGTGGCTGCGCCTCTGACTTCT 149
Query 131 GTTGCAGTAAATATGGCTACTGTGGTACGACCGATGAGTTCTGCGGCGACGGCTGCCAGG 190
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 150 GTTGCAGCAAATATGGCTACTGTGGTACGACCGATGAGTTCTGCGGCGAGGGCTGCCAGG 209
Query 191 CAGGACCTTGCCGGAGTGGTGGCA-GCGGTGGAGATCCTGCTGTTTCACTTGAAGGAACG 249
|||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||
Sbjct 210 CAGGACCTTGCCGGAGCAGTGG-AGGCGGTGGAGATCCTGCTGTTTCACTAGAAGGAACG 268
Query 250 GTGACACCTGACTTCTTTAACTCTATACTAAACCAAAGAGGTGATTGTCCAGGTAAAGGA 309
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 269 GTGACACCTGACTTCTTTAACTCTATACTAAACCAAAGAGGTGATTGTCCTGGCAAAGGA 328
Query 310 TTCTACACTCACGACACCTTCATCGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCC 369
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 329 TTCTACACTCACGACACCTTCATGGCCGCAGCTAATTCTTACCCTAGCTTCGGTGCTTCC 388
Query 370 ATCTCCAAACGCGAAATCGCTGCCTTTTTCGCTCACGTAGCCCAAGAAACAGAGTTCATG 429
|||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 389 ATCTCCAAACGCGAAATCGCGGCGTTTTTCGCTCACGTAGCCCAAGAAACAGGGTTCATG 448
Query 430 TGCTACATTGAGGAAATTGGTGGACCAGCAAAGGCCGCAGCCGGAGAGTACTGCGACACA 489
|| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||
Sbjct 449 TGTTACATTGAGGAAATTGATGGACCAGCCAAGGCCGCATCCGGAGAGTACTGCGACACA 508
Query 490 -ACTAAACCAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGTCGTGGTGCAATCCA 548
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 509 GA-GAAACCAGAGTTCCCATGTGCACAAGGAAAGGGCTACTATGGCCGTGGTGCAATCCA 567
Query 549 GCTCTCGTGGAACTACAACTACGGTCTCTGTGGCAGAGACC-TGAACGAGAACTTATTGG 607
|||||| |||||||||||||||||||||||||||| || || || |||||||||||||||
Sbjct 568 GCTCTCTTGGAACTACAACTACGGTCTCTGTGGCAAAG-CCTTGGACGAGAACTTATTGG 626
Query 608 CTTCACCAGAGAAAGTGGCTCAAGACCAAGTTCTTGCCTTCAAGACCGCTTTCTGGTTCT 667
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 627 CTTCACCAGAGAAAGTTGCTCAAGACCAGGTTCTTGCCTTCAAGACCGCTTTCTGGTTCT 686
Query 668 GGACCACTAATGTTCGCGCGAGTTTTAAATCGGGCTTTGGCGCGACCATCAGAGCTGTGA 727
||||||||||||||||| ||||||||||||||||||||||||| || ||||| || ||||
Sbjct 687 GGACCACTAATGTTCGCACGAGTTTTAAATCGGGCTTTGGCGCAACAATCAGGGCAGTGA 746
Query 728 ATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGTATT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 ATAGTAGGGAGTGTAGCGGAGGAGATTCTACAGCCAAAGCCGCCAACAGGATTAAGTATT 806
Query 788 TCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCGGGAGATAACCTCACTTGTTAA 843
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 807 TCCAAGACTATTGTGGCAAGCTTGGAGTTGCACCTGGAGATAACCTCACTTGTTAA 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5