BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902389
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily pr... 693 0.0
AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily pr... 230 1e-59
> AT2G43730.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18124648-18125868 REVERSE LENGTH=1047
Length=1047
Score = 693 bits (375), Expect = 0.0
Identities = 507/567 (89%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 1 TCCATCAAATGTATTCAGTTTAGCTATTTTCAGAACGGAATTCATGTCGTGTCTGAAAAG 60
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 326 TCCATAAAATGTATTCAGTTTAGCTATTTTCATAACGGAGTTCATGTCGTGTCTGAAAAG 385
Query 61 TACGGTTCGTCCAAAGGTCGATCCTACGAAATAGTGAGACTGAATGACGATGAGTATGTG 120
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 386 CACGGTTCGTCCAAAGGTCAATCCTACGAAATCGTGAGACTGAATGACGATGAGTATGTG 445
Query 121 ACTGCGTTGAGTGGAATATATTATGAAAGAAAGATCACGTCTTTGACATTTCACACTAAT 180
|||| |||||||||||||| || || |||||| ||||||||||||||||||||||||||
Sbjct 446 ACTGGGTTGAGTGGAATATTTTGGGAGAGAAAGGTCACGTCTTTGACATTTCACACTAAT 505
Query 181 CAGGGGAAACACGGGCCGTTTTGTGATATACCTGGATATTCATCAA-TTATTGTGGCTGG 239
|||||||||||||||||||||||| || | ||||||||||||||| ||| | |||| |
Sbjct 506 CAGGGGAAACACGGGCCGTTTTGTAATGGAACTGGATATTCATCAAGTTA-TATGGC-AG 563
Query 240 A-CGTACG-AGGAAAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 297
| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 ATTATAAGAAGG-AAATTGATGTGAAGATACGTGATCGTCGTGAGTTTGGTGGTTTCTTT 622
Query 298 GGGTCTTTTGATGAC---TTTGGCGATCTGACTTCCATTGGAATTTATGTTTATCCCACG 354
||||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||
Sbjct 623 GGGTCTTTTGATGACGAATTTGACGGTCTGACATCCATTGGCATTTATGTTTATCCCACG 682
Query 355 TACCATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATACATTCGCTCATAAA 414
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 683 TACGATAACAAGCCCACTCTCAATCAAGCATGGGATCCTCTATATGCATTCGC-C----- 736
Query 415 CGTACACTCAATTACCAAATCCCTACGATCGTGGATGGTATTCCTGTTAAACACATCCGT 474
| | | ||| | ||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 737 C--A---T-AAT--C-AAATCCCGACGATCGCGGATGGTATTCCTGTTATGCACATCCGT 787
Query 475 TATAAGCCCAAACTCAAAGACCGGATACTTTCCAAGTTGGATTTCAAAAGTGCTATGTGG 534
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
Sbjct 788 TATAAGCCCAAACTCAAAGACCGGATATTTTCCAAGTTGGATTTCAAAAGAGCTATGTTG 847
Query 535 TGCCTCATAAAAGCTTTCTTGGATTAA 561
||||| ||||||| |||||||||||||
Sbjct 848 TGCCTGATAAAAGTTTTCTTGGATTAA 874
> AT2G43740.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr2:18126578-18128293 REVERSE LENGTH=1589
Length=1589
Score = 230 bits (124), Expect = 1e-59
Identities = 222/267 (83%), Gaps = 16/267 (6%)
Strand=Plus/Plus
Query 94 GTGAGACTGAATGACGATGAGTATGTGACTGCGTTGAGTGGAATATAT-TATG-AAAGAA 151
|||||||| ||||||||||||| |||||| | |||||||| ||||||| | || ||||
Sbjct 722 GTGAGACTAAATGACGATGAGTTTGTGACCGGGTTGAGTGCAATATATCTTTGTAAAG-- 779
Query 152 AGATCACGTCTTTGACAT-TTCACACTAATCAGGGGAAACACGGGCCGTTTTGTGATATA 210
||||||| ||||| || ||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 780 GGATCACGAATTTGA-ATATTCACACTAATCAGGGGAAACACGGCCCGATTTGTGATAGA 838
Query 211 CCTGGAT-ATTC-ATCAATTATTGTGGCTGGACGTACGA-G-GAAAATTGATGTGAAGAT 266
| || | || | || |||| ||| | || || | | | ||||||||||||||||
Sbjct 839 TATTCATCA-TCAAAGAA-TATTATGGAT-AAC-TATAAGGTGGAAATTGATGTGAAGAT 894
Query 267 ACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATGACTTTGGCGA-TCTGA 325
||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |||||
Sbjct 895 ACGTGATCGTCGTGAGTTTGGTGGTTTCTTTGGGTCTTTTGATAACTATGGC-ACTCTGA 953
Query 326 CTTCCATTGGAATTTATGTTTATCCCA 352
|||||||||| |||||||| | |||||
Sbjct 954 CTTCCATTGGCATTTATGTGTGTCCCA 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5