BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902397

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G43795.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   608    1e-173
  AT3G59800.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   292    1e-78 


> AT2G43795.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G59800.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:18140944-18142369 REVERSE LENGTH=774
Length=774

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 410/449 (91%), Gaps = 6/449 (1%)
 Strand=Plus/Plus

Query  1    ATGGATGGTTCATTTCATACACCAGAATGGCATGCTGCTCGTTTGGCCAGTCTCAAGACT  60
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct  71   ATGGATGGTTCATTTCATTCACCAGAATGGCATGCAGCTCGTTTGGCCAGTCTCAAGACT  130

Query  61   ACACACACTCTTACTTGGGAAGAATATA-GACAGAAGCAAAAGGAAGAAGAACTGAAAAA  119
            |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct  131  ACACACACTCTTACTTGGGAAGAATATAAG-CAGAAGCAAAAGGAAGAAGAATTGAAAAA  189

Query  120  GGTTGAACTTGAAGCAGATACCGATATGTTGATGCGTGAGTATAGAGCTCAGCTGGATGC  179
            |   ||| | ||||||||||||||||  |||||||||||||||||||||||||| |||||
Sbjct  190  GCAAGAAGTCGAAGCAGATACCGATAAATTGATGCGTGAGTATAGAGCTCAGCTAGATGC  249

Query  180  TGAAAGAGCAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGCGATAGATCCACgaaaga  239
            |||||| ||||||||||||||||||||||||||||||||||| || | ||||| ||||| 
Sbjct  250  TGAAAGGGCAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGTGACATATCCAGGAAAG-  308

Query  240  taggaaggagagagagctcacagatagaaagggcagagattcgaagaggaagagaagcaa  299
              | ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct  309  --G-AAGGAGAGAGAGCTCACAGATAGAAAGTGCAGAGATTCCAAGAGGAAGAAAAGCAA  365

Query  300  aaagagaaagCATTCGAGAAGGGGATCATCTGACTCAAGCTCATCCTCCGAATCATCAAG  359
            ||||||||||||||||| |||| ||||||| |||||||||||||| || ||||| |||||
Sbjct  366  AAAGAGAAAGCATTCGAAAAGGCGATCATCAGACTCAAGCTCATCTTCTGAATCTTCAAG  425

Query  360  TAGTGACGAAGAGGAATTTAGGAAATCAAGGTCAAGTTCTAAAAGACCAAAAAGGGAGAG  419
            ||||||| |||| |||| |||||| ||||||||||||||||| || ||||| ||||||||
Sbjct  426  TAGTGACAAAGACGAATCTAGGAAGTCAAGGTCAAGTTCTAAGAGGCCAAAGAGGGAGAG  485

Query  420  GAAACACAAGTCTAGAGGCAGACATTCAA  448
            |||||||||||||||||||||||| ||||
Sbjct  486  GAAACACAAGTCTAGAGGCAGACACTCAA  514


> AT3G59800.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G43795.2); 
Has 15361 Blast hits to 8061 proteins in 537 species: Archae 
- 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants 
- 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI 
BLink). | chr3:22094437-22096358 REVERSE LENGTH=905
Length=905

 Score =  292 bits (158),  Expect = 1e-78
 Identities = 235/271 (87%), Gaps = 10/271 (4%)
 Strand=Plus/Plus

Query  2    TGGATGGTTCATTTCATACACCAGAATGGCATGCTGCTCGTTTGGCCAGTCTCAAGACTA  61
            ||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||
Sbjct  273  TGGATGGTTCATTTCATACACCAGAGTGGCATGCGGCTCGTTTGGCTAGCCTCAAGACTA  332

Query  62   CACACACTCTTACTTGGGAAGAATAT-AGACAGAAGCAAAAGGAAGAAGAACTGAAAAAG  120
            |||| ||| |||| |||||||| ||| || ||||||||||||||||||||| ||||||||
Sbjct  333  CACATACTATTACCTGGGAAGAGTATAAG-CAGAAGCAAAAGGAAGAAGAATTGAAAAAG  391

Query  121  GTTGAACTTGAAGCAGATACCGATATGTTGATGCGTGAGTATAGAGCTCAGCTGGATGCT  180
            |  ||||||||||||||||||||||   ||||||||||||||||||||||||||||||| 
Sbjct  392  GGAGAACTTGAAGCAGATACCGATAAACTGATGCGTGAGTATAGAGCTCAGCTGGATGCA  451

Query  181  GAAAGAG-CAATGAAGCTCTCTAAGGGAAGGAACTATTCTAGCGATA-GATCCACgaaa-  237
            ||||| | |  |||| ||||| || ||||||||||||||||| |||| | || |||||| 
Sbjct  452  GAAAG-GTCGTTGAAACTCTCCAAAGGAAGGAACTATTCTAGTGATAAG-TC-ACGAAAA  508

Query  238  gataggaaggagagagagctcacagatagaa  268
            |||| ||| || |||||  ||| ||| ||||
Sbjct  509  GATAAGAAAGACAGAGAT-TCAAAGA-AGAA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5