BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902403
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43860.1 | Symbols: | Pectin lyase-like superfamily protein... 1967 0.0
> AT2G43860.1 | Symbols: | Pectin lyase-like superfamily protein
| chr2:18162945-18164428 REVERSE LENGTH=1218
Length=1218
Score = 1967 bits (1065), Expect = 0.0
Identities = 1168/1219 (96%), Gaps = 2/1219 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTATAACACTTCATGCCTTATTCTTCCTTTGGCTCTCATCTTTCTTGATTTCATC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1 ATGGTTTATAACACTTCATGCCTTATTCTTCCTTTGGCTCTCATCATTCTTGATTTTACC 60
Query 61 TTAATCTCATCATTAGCCCATCCGATTCCAAGCACACTCAACGTCTTATCCTATGGAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTAATCTCATCATTAGCCCATCCGATTCCAAGCACACTCAACGTCTTATCCTACGGAGCT 120
Query 121 AAACCAGACGGCTCAAAAGACTCAACCAAAGCCTTCTTAGCCGCATGGGACGTCGCTTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AAACCAGACGGCTCAAAAGACTCAACCAAAGCCTTCTTAGCCGCATGGGACGTTGCTTGT 180
Query 181 GCCTCGGCTAACCCTACAA-TGATAATCGTACCAAAAGGACGGTTCTTGGTCGGGAACCT 239
|| || ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCATCCGCTAATCCTACAACT-ATAATCGTACCAAAAGGACGGTTCTTGGTCGGGAACCT 239
Query 240 TGTTTTCCAAGGCAACGAGTGTAAGCAAGCGCCAATATCTATTCGTATAGCAGGCTCAAT 299
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTTTTTCATGGCAACGAGTGTAAGCAAGCGCCAATATCTATTCGTATAGCAGGCTCAAT 299
Query 300 TGTTGCTCCGGGAGATTTTAGAATTATCGCAGGCTCAGAACATTGGATCTCGTTCGAGGA 359
|||||||||| ||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 300 CGTTGCTCCGGAAGATTTTAGAATTATCGCAAGCTCAAAACATTGGATCTGGTTCGAGGA 359
Query 360 TGTTACTGATGTTTCAATCTACGGTGGAATACTTGACGCTCAAGGCACTAGTTTATGGAA 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 TGTTACTGATGTTTCAATCTACGGTGGAATACTTGACGCTCAAGGCACTAGTTTGTGGAA 419
Query 420 ATGCAAGAACAACGGTGGCCATAATTGTCCTACTGGTGCCAAGAGTTTGATGTTTAGTGG 479
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 420 ATGCAAGAACAACGGTGGCCATAATTGTCCTACCGGTGCCAAGAGTTTGGTGTTTAGTGG 479
Query 480 GTCAAATAACATCAAAATCAATGGTTTAACGTCGATAAACAGCCAGAGATTCCATATAGT 539
|||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 480 GTCAAATAACATCAAAATCAGTGGTTTAACGTCGATCAACAGCCAGAAATTCCATATAGT 539
Query 540 CATCGATAAAAGCAATAACGTGAACATTGACGGCGTTAAGGTTTCTGCTGATGCGAATAG 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 CATCGATAATAGCAATAACGTGAACATTGACGGCGTTAAGGTTTCTGCTGATGAGAATAG 599
Query 600 CCCTAACACCGATGGGATTCACGTCGAATCATCTCACTCCGTCCACATCACTAACTCTAG 659
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 600 CCCTAATACCGATGGGATTCACGTCGAATCATCTCACTCCGTCCATATCACTAACTCAAG 659
Query 660 AATCGGAACCGGTGATGATTGCATCTCCATCGGTCCAGGATCTACTGATGTTTTCATACA 719
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||
Sbjct 660 AATCGGAACCGGTGATGATTGCATCTCCATCGGTCCAGGATCCACTAATGTATTCATACA 719
Query 720 AACAATTCAATGTGGTCCAGGCCACGGCATCAGTATTGGAAGTCTTGGACGAGCAGAGGA 779
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACCATTCGATGCGGTCCAGGCCACGGCATCAGTATTGGAAGTCTTGGACGAGCAGAGGA 779
Query 780 AGAACAAGGAGTGGATAACGTGACCGTGAGTAACGTGGATTTCATGGGAACGGATAACGG 839
|||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 AGAACAAGGAGTAGATAATGTGACCGTGAGTAACGTGGATTTCATGGGAACGAATAACGG 839
Query 840 AGTTAGGATCAAAACATGGGGAAAAGATAGCAACAGTTTCGCTAGAAACATCGTTTTCCA 899
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 840 AGTTAGGATCAAAACATGGGGGAAAGATAGCAACAGTTTCGCTAGAAACATTGTTTTCCA 899
Query 900 ACATATTAATATGAAGATGGTCAAGAACCCGATCATTATAGACCAACACTACTGTCTTGA 959
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 900 ACATATTAACATGAAGATGGTCAAGAACCCAATCATTATAGACCAACACTACTGTCTTCA 959
Query 960 CAAACCTTGCCCTAAACAGGAATCTGGAGTTAAAGTATCAAATGTGAGATATGAAGATAT 1019
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 TAAACCTTGCCCTAAACAGGAATCAGGAGTTAAAGTATCAAATGTGAGATATGAAGATAT 1019
Query 1020 ACACGGGACTTCGAATACGGAAGTGGCGGTTTTGTTAGATTGTAGTAAGGATAAACCATG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 ACACGGGACTTCGAATACGGAAGTGGCGGTTTTGTTAGATTGTAGTAAGGAGAAACCATG 1079
Query 1080 TACCGGTATTGTAATGGACGATGTGAATCTTGTCTCTGTTAATCGACCGGCTCAGGCGTC 1139
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TACCGGTATTGTAATGGACGATGTGAATCTTGTCTCTGTTCATCGACCGGCTCAGGCGTC 1139
Query 1140 TTGCGATAATGCAAATGGATTAGCGAACGACGTCGTCCCATTCACTCCTTGTCTAAAGAG 1199
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TTGCGATAATGCAAATGGATCAGCGAACGACGTTGTCCCATTCACTCCTTGTCTAAAGAG 1199
Query 1200 CGAGATAATTATGACTTAA 1218
||||| ||||| ||||||
Sbjct 1200 GGAGATCATTATAACTTAA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5