BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902409
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43920.1 | Symbols: HOL2, ATHOL2 | S-adenosyl-L-methionine-d... 721 0.0
AT2G43910.2 | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER 1... 472 2e-132
> AT2G43920.1 | Symbols: HOL2, ATHOL2 | S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein | chr2:18189008-18191348
REVERSE LENGTH=1095
Length=1095
Score = 721 bits (390), Expect = 0.0
Identities = 484/528 (92%), Gaps = 12/528 (2%)
Strand=Plus/Plus
Query 1 CTCATTCTGCGTCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACTCTTGTCCCCGGC 60
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 263 CTCATTCTTCATCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACCCTTGTCCCCGGC 322
Query 61 TGTGGCGGAAGACTTA-AATGCTTG-TAC-ATTAACATTTTATG-TCGTTTCGTAGTTGG 116
||||||||| ||| | | | | | | | | | || || ||||||||||||||
Sbjct 323 TGTGGCGGAGGAC--ACGACG-TCGTTGCGA-TGGCAAGCCCTGAACGTTTCGTAGTTGG 378
Query 117 ATTGGATATTTCTGATAAGGCTCTC-ACGAAAGCTAATGAGACTTACGGCTCCTCACCAA 175
||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 379 ATTGGATATTTCTGACAAGGCTCTCAAC-AAAGCTAATGAGACTTACGGCTCCTCACCGA 437
Query 176 AGGCAAAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTAT 235
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAACGAATTAT 497
Query 236 TCGACTTTATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCAT 295
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TTGACCTCATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCAT 557
Query 296 GGGGTGAATCCATGCATGAACTCCTGAAACCTGACGGAGAACTCATAACTCTGATGTATC 355
||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 558 GGGGTAAATCCATGCATGAACTCCTCAAACCTGACGGAGAACTTATAACTCTTATGTATC 617
Query 356 CGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 CGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGATG 677
Query 416 TGTTGGTTCCGTTAGGATTTAAAGCAGTGTCCATTGAGGAGAACCCAGACTCCATTCCCA 475
||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 678 TGTTGGTTCCGGTAGGATTTAAAGCGGTGTCCGTTGAGGAGAACCCAGACTCCATTCCCA 737
Query 476 CTCAGGCCGG-CAAAGAGAAGCTTGCGAGGTGGAAGAAGATTAACTGA 522
||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 738 CTC-GTAAGGGCAAAGAGAAGCTTGCGAGGTGGAAGAAGATTAACTGA 784
> AT2G43910.2 | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER
1 | chr2:18184491-18187028 REVERSE LENGTH=923
Length=923
Score = 472 bits (255), Expect = 2e-132
Identities = 442/530 (83%), Gaps = 21/530 (4%)
Strand=Plus/Plus
Query 1 CTCATTCTGCGTCTTCTCGACTCTTCAGCTCTCCCTCTTGGCCGTACTCTTGTCCCCGGC 60
|||||| | | |||| ||||| |||| | ||||| ||||||||| |||| |||||||||
Sbjct 240 CTCATTGTTCATCTTGTCGACACTTCCTCACTCCCACTTGGCCGTGCTCTGGTCCCCGGC 299
Query 61 TGTGGCGGAAGACTTA-AATGCTTG-TAC-ATTAACATTTTATG-TCGTTTCGTAGTTGG 116
||||| ||| ||| | | | | | | | | | || | || || ||||| |||||
Sbjct 300 TGTGGTGGAGGAC--ACGACG-TCGTTGCGA-TGGCAAGTCCTGAACGCTTCGTTGTTGG 355
Query 117 ATTGGATATTTCTGATAAG-GCTCTCACGAAAGCTAATGAGACTTACGGCTCCTCACCAA 175
|||||||||||| || ||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 356 ATTGGATATTTCCGA-AAGCGCACTCGCGAAAGCTAATGAGACTTACGGCTCCTCACCAA 414
Query 176 AGGCAAAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACTTGGCGTCCTAAC-GAATTA 234
||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 415 AGGCAGAGTACTTTTCGTTCGTGAAGGAAGATGTTTTCACGTGGCGTCCTA-CTGAATTA 473
Query 235 TTCGACTTTATCTTCGATTATGTGTTTTTCTGCGCAATTGAACCGGAGATGAGACCTGCA 294
|||||| | ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 474 TTCGACCTCATCTTCGATTATGTGTTCTTCTGTGCCATTGAACCGGAGATGAGACCTGCA 533
Query 295 TGGGGTGAATCCATGCATGAACTCCTGAAACCTGACGGAGAACTCATAACTCTGATGTAT 354
|||| | |||| ||| |||||||| | ||||||||||| |||||||||||||| ||||||
Sbjct 534 TGGGCTAAATCTATGTATGAACTCTTAAAACCTGACGGCGAACTCATAACTCTCATGTAT 593
Query 355 CCGATGACCGACCACGAGGGTGGAGCTCCCTACAAAGTAGCTTTGTCTTCCTACGAAGAT 414
||||| |||||||||| |||||| ||||||||||||||| | | ||| ||| ||||||
Sbjct 594 CCGATTACCGACCACGTTGGTGGACCTCCCTACAAAGTAGATGTCTCTACCTTCGAAGAG 653
Query 415 GTGTTGGTTCCGT-TAGGATTTAAAGCAGTGTCCATTGAGGAGAACCCAGACTCCATTCC 473
|||||||| || | |||||||||| |||||||| | |||||||| || || |||||||
Sbjct 654 GTGTTGGTGCC-TATAGGATTTAAGGCAGTGTCTGTCGAGGAGAATCCTCACGCCATTCC 712
Query 474 CACTCAGGCCGGCAAAGAGAAGCTTGCGA-GGTGGAAGAAGATTAACTGA 522
|||| ||| ||||||||||| | || ||||||||||||| || |||
Sbjct 713 AACTC-GGC----AAAGAGAAGCTGG-GAAGGTGGAAGAAGATCAATTGA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5