BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902422
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44060.1 | Symbols: | Late embryogenesis abundant protein, ... 1495 0.0
> AT2G44060.1 | Symbols: | Late embryogenesis abundant protein,
group 2 | chr2:18226317-18228151 FORWARD LENGTH=1222
Length=1222
Score = 1495 bits (809), Expect = 0.0
Identities = 919/972 (95%), Gaps = 8/972 (1%)
Strand=Plus/Plus
Query 1 ATGTCGACTTCTGAGGATAAACCAGAACTCCTCAGT--AG-AGTTCATCAGGAGGGTGAC 57
|||||||| |||||||||||||| ||| || ||||| || |||||||||||||||||||
Sbjct 82 ATGTCGACATCTGAGGATAAACCGGAAATCATCAGTAGAGTAGTTCATCAGGAGGGTGAC 141
Query 58 GTGGAAATTGTCGATAGAAGTCAGAAGGATAAGGACGAGG---AAGAAGAAGGGAAAGGT 114
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 142 GTGGAAATCGTCGATAGAAGTCAGAAGGATAAGGACGAGGAAAAAGAAGAAGGGAAAGGT 201
Query 115 GGATTCCTCGATAAGGTGAAAGATTTCATTCATGACATTGGTGAGAAAATCGAAGGAACC 174
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 202 GGATTCCTCGATAAGGTGAAAGATTTCATTCATGACATTGGTGAGAAACTCGAGGGAACC 261
Query 175 ATTGGGTTTGGGAAGCCAACTGCTGATGTCTCTGCGATTCATATCCCCAAGATCAATCTC 234
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 262 ATTGGCTTTGGGAAGCCAACTGCTGATGTCTCTGCGATTCATATCCCTAAGATCAATCTT 321
Query 235 GAGAGGGTAGATATTGTTGTGGATGTGCTTGTGAAGAACCCGAATCCAGTTCCTATCCCT 294
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 322 GAGAGGGCAGATATTGTTGTGGATGTGCTTGTCAAGAACCCGAATCCAGTTCCTATCCCT 381
Query 295 CTGATCGATGTTAACTATCTGGTCGAGAGCGATGGGAGGAAACTGGTTTCGGGATTGATC 354
|| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 382 CTCATCGATGTCAACTACCTGGTCGAGAGCGATGGGAGGAAACTGGTTTCTGGTTTGATC 441
Query 355 CCGGATGCTGGAACCCTCAAGGCACATGGAGAAGAAACTGTGAAGATACCATTGACTTTG 414
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 442 CCGGATGCTGGAACACTCAAGGCTCATGGAGAAGAAACTGTGAAGATACCATTGACGTTG 501
Query 415 ATCTATGATGACATCAATAGCACTTACAACGATATCAACCCCGGGATGATCATACCTTAC 474
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATCTATGATGACATCAAGAGCACTTACAACGATATCAACCCCGGGATGATCATACCTTAC 561
Query 475 AGGATCAAGGTTGATCTGATTGTGGATGTGCCAGTATTGGGAAGACTGACATTGCCGCTG 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGAATCAAGGTTGATCTGATTGTGGATGTGCCAGTATTGGGAAGACTGACATTGCCGCTG 621
Query 535 GAGAAACGTGGAGAGATCCCGATTCCAAAGAAACCCGACGTTGATATCGAGACGATTAAG 594
|||||| ||||||||||||| |||||||||||||| || ||||||||||||| |||||||
Sbjct 622 GAGAAATGTGGAGAGATCCCAATTCCAAAGAAACCTGATGTTGATATCGAGAAGATTAAG 681
Query 595 TTCCAGAAGTTTTCTTTGGAAGAAACCGTGGCGATCCTCCACGTGAGGCTTGAGAACATG 654
||||||||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||||
Sbjct 682 TTCCAGAAGTTCTCTTTGGAGGAAACCGTGGCGATTCTCCATGTGAGGCTTCAGAACATG 741
Query 655 AATGACTTT-GACTTGGGGCTCAATGACTTGGACTGTGAAGTTTGGTTGTGTGATGTAAG 713
||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 742 AATGA-TTTCGACTTGGGGCTCAATGACTTGGACTGTGAAGTTTGGCTGTGTGATGTAAG 800
Query 714 CATTGGGAAAGCAGAGATATCGGACTCGATCAAGCTTGACAAAAACGGAAGCGGCTTGAT 773
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 801 CATTGGGAAAGCAGAGATCGCGGACTCGATCAAGCTTGACAAAAACGGAAGCGGATTGAT 860
Query 774 TAATGTGCCAATGACATTCCGACCAAAGGACTTTGGTTCCGCGCTTTGGGATATGATCCG 833
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 861 TAATGTGCCGATGACATTCCGACCAAAGGACTTTGGTTCTGCGCTTTGGGATATGATTCG 920
Query 834 TGGGAAAGGAACTGGGTACACTATCAAAGGTAATGTTGATGTTGATACACCATTTGGAGC 893
||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 921 TGGTAAAGGAACAGGGTACACAATCAAAGGTAATATTGATGTTGATACACCATTTGGAGC 980
Query 894 TATGAAGCTTCCTATTATCAAGGAAGGTGGATCGACCCGTCTGAAGAAGGAAGATGATGA 953
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 981 TATGAAGCTTCCTATTATCAAGGAAGGTGGAGAGACCCGTCTGAAGAAGGAAGATGATGA 1040
Query 954 TGACGACGATGA 965
||||||||||||
Sbjct 1041 TGACGACGATGA 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5