BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902462
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10180.1 | Symbols: | P-loop containing nucleoside triphosp... 1129 0.0
> AT3G10180.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:3146393-3154644
REVERSE LENGTH=3822
Length=3822
Score = 1129 bits (611), Expect = 0.0
Identities = 941/1097 (86%), Gaps = 35/1097 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCACGGCCGGTTTCGCCGGATGAAGCAAAGACG 60
||||||||||||||||||||||||||||| || ||| ||||| |||| || || |||||
Sbjct 1 ATGGAGAGAATCCATGTCTCAGTCAGAGCGCGACCGCTTTCGTCGGAGGACGCGAAGACA 60
Query 61 AGTCCCTGGAAAATCTCTTCCAATTCAATCTTCAT-CTCAA--AC-CAGC-C-CGCGTTT 114
||||||||||| ||||||||| | ||||| ||||| | ||| || | | | ||| |||
Sbjct 61 AGTCCCTGGAAGATCTCTTCCGACTCAATTTTCATGCCCAATCACTCTTCTCTCGCTTTT 120
Query 115 AAATTTGATAGGATTTATAGACAAGATTGCAAAACTATTGACGTGTATGAAGCTAGAACT 174
|||||||| | |||| |||| ||||||| |||||| | | |||||||| || | ||
Sbjct 121 GAATTTGATCGAATTTTTAGAGAAGATTGTAAAACTGTCCAAGTGTATGAGGCGCGGACG 180
Query 175 AAGGAGATTGTGTCTGCTACTGTTCGTGGATTCAACGGAACTGTGCTTGCTTATGGACAA 234
||||||||||| ||||| |||||||||||||||||||||| || ||||||| || |||
Sbjct 181 AAGGAGATTGTTTCTGCCGCTGTTCGTGGATTCAACGGAACCGTATTTGCTTACGGGCAA 240
Query 235 ACAAATAGTGGCAAGACACATACAATGAGAGGCTCAACTATTGAACCTGGAATCA-TCTC 293
|| || ||||||||||| ||||||||| |||||||| |||||||||||||| | | || |
Sbjct 241 ACTAACAGTGGCAAGACGCATACAATGCGAGGCTCACCTATTGAACCTGGAGTTATTC-C 299
Query 294 TCTTGCTGTTCATGATTTGTTTGATATTATCTCTCAGGATACAAGCAGGGAATATT-TGT 352
||| ||||| |||||||||||||| | ||| | ||||||| |||| || || | || |||
Sbjct 300 TCTCGCTGTACATGATTTGTTTGACACTATATATCAGGATGCAAGTAGAGAGT-TTCTGT 358
Query 353 TGCGCATGTCGTATCTTGAGATTTACAATGAAAATATAAACGATTTGTTGGATCCTCT-A 411
|||| |||||||| || |||||||| |||||| |||| ||||||||| ||| || || |
Sbjct 359 TGCGTATGTCGTACCTGGAGATTTATAATGAAGATATTAACGATTTGCTGG--CCCCTGA 416
Query 412 -AACAGGAAACTACAGATTCATGAAAATCTAGAGAAAGGAGTATTTGTTGCTGGACTACG 470
|||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 417 GCACAGAAAACTACAGATTCATGAAAATCTAGAGAAAGGAATATTTGTTGCTGGATTACG 476
Query 471 AGAAGATATTGTTGATTCCCCTCAACAAGTTCTTGAATTGATGGAATGTGGAGAATCTCA 530
|||||| ||||| | ||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 477 AGAAGAGATTGTCGCTTCCCCTCAACAAGTCCTTGAAATGATGGAATTTGGAGAATCTCA 536
Query 531 TAGACATATTGGGGAGACAAATATGAATCATTACAGTAGCAGATCTCACACTATTTTCCG 590
| | ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 537 TCGGCATATTGGGGAGACAAATATGAATCTTTACAGTAGCAGATCTCACAC-----T--- 588
Query 591 CATGATTTTCGTCAAACAGATTATAGAAAGTAGAGAAAAGACGCGAGATGAAGGTGTTGG 650
|| |||||| | | |||||||||||||||| | |||| || |||||||||||||||
Sbjct 589 -AT--TTTTCG-C--A-TGATTATAGAAAGTAGACAGAAGATGCAAGATGAAGGTGTTGG 641
Query 651 AAATGT-CTGTGATGCTGTTAGTGTCTCTGTTCTGAATGTGGTGGATCTTGCTGGTTCAG 709
|||| | ||||||||| ||| |||| |||||||||||| |||||||||| ||||||||||
Sbjct 642 AAAT-TCCTGTGATGCAGTTCGTGTTTCTGTTCTGAATTTGGTGGATCTAGCTGGTTCAG 700
Query 710 AACGGGCTGCAAAAACCGGCGCAGAAGGTGTTAGGCTGAAGGAGGG-TACACATATAAAT 768
||||||||||||||||||| ||||| ||||||||| |||||||||| | ||||||||||
Sbjct 701 AACGGGCTGCAAAAACCGGTGCAGAGGGTGTTAGGTTGAAGGAGGGCT-CACATATAAAC 759
Query 769 AAAAGCTTGATGACACTTGGGACTGTAATTAAAAAGTTGAGTGAGGGAGTTGAAAATCAA 828
||||||||||||||||| |||||||| || ||||| ||||||| ||||| |||| ||||
Sbjct 760 AAAAGCTTGATGACACTCGGGACTGTCATAAAAAAACTGAGTGAAGGAGTAGAAACTCAA 819
Query 829 GGTGGTCATATCCCATACCGAGACAGCAAGCTTACAAGGATTTTGCAGCCAGCTTTAGGT 888
||||||||| |||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 820 GGTGGTCATGTCCCGTACCGAGACAGCAAGCTTACAAGGATCTTGCAGCCTGCCTTAGGT 879
Query 889 GGAAATGCAAATACAGCAATCATATGCAATATAACACTTGCACTGATTCATGTAAATGAA 948
|| ||||| || ||||| || ||||||||||| |||||||||| |||||||| | |||||
Sbjct 880 GGGAATGCCAACACAGCTATTATATGCAATATCACACTTGCACCGATTCATGCAGATGAA 939
Query 949 ACCAAGAGCAGTCTTCAATTCGCTAGCCGAGCACTGCGTGTCACTAACTGTGCGCATGTT 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 940 ACCAAGAGCAGTCTTCAGTTCGCTAGCCGAGCACTGCGTGTCACTAACTGTGCCCATGTC 999
Query 1009 AATGAGATATTGACTGATACTGCTTTATTAAAGCGCCA-AAGTAAGGAGATAAAGGAGCT 1067
|||||||| ||||||||| ||||| ||||||||||||| ||| ||||||||| |||||||
Sbjct 1000 AATGAGATTTTGACTGATGCTGCTCTATTAAAGCGCCAGAAG-AAGGAGATAGAGGAGCT 1058
Query 1068 CAGATCCAAACTTAAGA 1084
|||||||||||| ||||
Sbjct 1059 CAGATCCAAACTAAAGA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5