BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902471
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60120.1 | Symbols: BGLU27 | beta glucosidase 27 | chr3:2220... 1351 0.0
> AT3G60120.1 | Symbols: BGLU27 | beta glucosidase 27 | chr3:22205947-22208952
FORWARD LENGTH=1809
Length=1809
Score = 1351 bits (731), Expect = 0.0
Identities = 1339/1627 (82%), Gaps = 64/1627 (4%)
Strand=Plus/Plus
Query 8 AAGGAAAGAAGATTTACGCGGATAAAAGTTCGTTTGGCCGATCCGATTTCCCTGAAGGCT 67
|||| ||||| || ||| || | |||| ||||| |||||||| |||||||| || || |
Sbjct 195 AAGG-AAGAATATGTACTCGAAGAAAAACTCGTTCGGCCGATCAGATTTCCCAGAGGGTT 253
Query 68 T-CTTGTTTGGGACAGCCTCATCGGCTTACCAATACGAAGG-GGCTGTTAACGATGCCT- 124
| ||| || || ||||| ||||||||||||||||| ||||| | | | ||||| | ||
Sbjct 254 TCCTT-TTCGGTACAGCTTCATCGGCTTACCAATATGAAGGAGCCAG-AAACGAAG-CTC 310
Query 125 CTCGAGGGCTA-AGTGTTTGGGATACTTTTGTCCGCAAGCATCCAGAAAGGAATTGTTAC 183
||||| || | ||||||||||| || ||||| ||||| ||||||| || ||||| |||
Sbjct 311 CTCGA-GGAGAGAGTGTTTGGGACACATTTGTTCGCAAATATCCAGAGAGAAATTGCTAC 369
Query 184 TCTGATGCGGACCAAGCTGTGGAGTTTTATCACCATTACAAGGAAGATATTCAAAGAATG 243
||| ||||||||||||| | ||||| ||| ||||||||||||| ||||| || ||||||
Sbjct 370 TCTAATGCGGACCAAGCAATCGAGTTCTATAACCATTACAAGGACGATATCCAGAGAATG 429
Query 244 AAAGATATCAATATGGATTCATTCAGATTCTCAATCTCATGGCCTCGGATTCTTCCTCAT 303
|| ||||| || |||||| | ||||||||||| ||||| |||||| ||||| |||||| |
Sbjct 430 AAGGATATTAACATGGATGCTTTCAGATTCTCTATCTCTTGGCCTAGGATTTTTCCTCTT 489
Query 304 GGAAAGAAAAGTAGAGGAGTGAACAAGGAGGGAATCA-AATTTTATAACGACCTCATCGA 362
||||||||||| | |||||||||||| || ||||| | |||| |||||||| ||||||||
Sbjct 490 GGAAAGAAAAGCAAAGGAGTGAACAAAGAAGGAAT-ACAATTCTATAACGATCTCATCGA 548
Query 363 TGAACTCCTAGCTAATGGAATCACTCCTCTCGCGACTTTGTTCCATTGGGACACTCCACA 422
||||||||| ||||| ||||| || |||||||| ||||| || || ||||| ||||| ||
Sbjct 549 TGAACTCCTCGCTAACGGAATAACACCTCTCGCCACTTTATTTCACTGGGATACTCCTCA 608
Query 423 AGC-CTTAGAAGATGAATACAATGG-TTTTCTAAGCGAAAAAGTTGTTGATGATTTC-CG 479
||| ||| ||||||||||||| ||| |||| |||||||| ||| ||||||||| ||| |
Sbjct 609 AGCACTT-GAAGATGAATACAGTGGATTTT-TAAGCGAAGAAGCTGTTGATGACTTCAAG 666
Query 480 CGA-CTT-CGCCACTATATGTTTTGAGGAATTTGGCGACCGTGTAAAGTAT-TGGGTGAC 536
|| || || | || ||||||||||||| ||||||||||||||||| | | ||||| ||
Sbjct 667 -GATTTTGCGGC-CT-TATGTTTTGAGGAGTTTGGCGACCGTGTAAAAT-TGTGGGTCAC 722
Query 537 ACTAAATGAGCCGTGGGTTTATAGTATTGGCGGGTATGATACCGGG-AGAAAAGCTCCTG 595
|||||| || || ||||| || |||||||| || ||||| | |||| |||||||| || |
Sbjct 723 ACTAAACGAACCATGGGTGTACAGTATTGGTGGCTATGACA-CGGGAAGAAAAGCCCCCG 781
Query 596 GTCGTGCCTCCAAATACATGAACGAAGCAGCTTTGGCTGGTGAATCGGGTCGT-GAGGTT 654
| ||||||||||||||||||||||||||||| |||| || ||||| |||| | ||||||
Sbjct 782 GACGTGCCTCCAAATACATGAACGAAGCAGCCGTGGCAGGAGAATCTGGTC-TCGAGGTT 840
Query 655 TATAATGTTAGTCACAATCTACT-CTTGGCTCATGCCGAGGCTGTTGAAGTCTTCAGGGA 713
|| | |||||||||||||||||| || |||||| ||||| |||||||| ||||||||| |
Sbjct 841 TACACTGTTAGTCACAATCTACTTCT-GGCTCACGCCGAAGCTGTTGAGGTCTTCAGGAA 899
Query 714 TAA-CCCAAAGTGTAAAGATGGGAAAATTGGTATTGCACATTGTCCGGTCTGGTTCGAAC 772
|| |||||| ||||||||||| || || ||||| || |||||||| || |||||||| |
Sbjct 900 CAATCCCAAA-TGTAAAGATGGCAAGATCGGTATCGCTCATTGTCCCGTATGGTTCGAGC 958
Query 773 CTTATGACTCGAACTGTCCTAAAGATCA-AGAAGCG-GTCGAGCGTGCCATGGAATTTAT 830
|||||||||||||||| |||||||| || |||||| | ||| || || ||||| |||||
Sbjct 959 CTTATGACTCGAACTGCCCTAAAGA-CATAGAAGCATG-CGAACGAGCTATGGAGTTTAT 1016
Query 831 GTTTGGATGGCACATGGATCCAACGGTCTATGGAGATTATCCGGAAGTCATGAAAAAGTT 890
||||||||||||||||||||| ||||| ||||||||||| || | |||||||||||| |
Sbjct 1017 GTTTGGATGGCACATGGATCCTACGGTGTATGGAGATTACCCTGCAGTCATGAAAAAATC 1076
Query 891 GATTGGAAAAAGATTACCGTCGTTTACTGCAGCGCAATCTAAGAAG-TTAAAAGGATCTT 949
||| |||||||||||||| || ||||| ||||| ||||| |||||| ||| | |||||||
Sbjct 1077 GATCGGAAAAAGATTACCATCATTTACCGCAGCACAATCCAAGAAGCTTAGA-GGATCTT 1135
Query 950 TTGACTTCGTTGGAGCAAATTATTACAGTGCCTTT-TACGTTAAAAATGTTGTTGACGTG 1008
|||| |||||||| | |||||||||||||| ||| ||||| |||||| ||| ||| |||
Sbjct 1136 TTGATTTCGTTGGGGTGAATTATTACAGTGC-TTTCTACGTCAAAAATATTGATGAAGTG 1194
Query 1009 GATCCTAATATTCCCGATTGGAGATCTGACGCACACATCGAATGGAAAAAACAAAACAAA 1068
||| | | | ||| |||||||||| ||||||| ||||||||||| |||| |||||||
Sbjct 1195 AATCATGACAAGCCCAATTGGAGATCAGACGCACGCATCGAATGGAGAAAAGAAAACAAC 1254
Query 1069 GCAGGACAAACTTTGGGTCCTA-GAGGTGGTTCAGAATGGGACTTTTTATACCCACAAGG 1127
||||| ||||| || ||| || |||||||||| |||||||||||| |||| ||||||||
Sbjct 1255 GCAGGGCAAACATTAGGTG-TAAGAGGTGGTTCGGAATGGGACTTTCTATATCCACAAGG 1313
Query 1128 G-TTAAGGAAGTTTTTGGTTTATGCCAAAAACAGATACGGAAGCCCTAAATTTATGATAA 1186
||| | |||||| | ||||||||| || | ||| | |||||| ||||||||||| |
Sbjct 1314 CCTTA-GAAAGTTTCTAAATTATGCCAAGAATAAATATGAAAGCCCGAAATTTATGATTA 1372
Query 1187 CTGAAAATGGACATTGCGATTTAGACTATGAGAAGAAGGCAAAACTTTCAAATTTGATGG 1246
| ||||| ||||| || ||| |||| |||||||| ||| | |||||||| || |||||||
Sbjct 1373 CCGAAAACGGACACTGTGATATAGATTATGAGAAAAAGCCTAAACTTTCTAACTTGATGG 1432
Query 1247 ATCTCCAGAGGACAGAGTACCACAA-AATACATCTCCAAAGCATCCACCAAGCCATCAAG 1305
||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||| ||
Sbjct 1433 ATCTCCAAAGGACAGAGTACCACAAGAA-ACATCTCCAAAGCATCCAACAAGCCATCCAG 1491
Query 1306 GAAGATAGTGTTCAAGTAGAAGGATACTATGCATGGTCATTGCTCGATAATTGCGAATGG 1365
|| ||| | ||| ||| |||||||||| ||| |||||||| || || ||||| ||||||
Sbjct 1492 GAGGATGGGGTTGTAGTTGAAGGATACTTTGCGTGGTCATTACTAGACAATTGTGAATGG 1551
Query 1366 AACGCTGGTTATGGAGTTCGATACGGATTGTTCTACGTAGACTACAACAACGGTCTAAAA 1425
||||| ||||||||||||||||| ||| | |||||||| || || ||||| || ||||||
Sbjct 1552 AACGCCGGTTATGGAGTTCGATATGGACTATTCTACGTCGATTATAACAATGGACTAAAA 1611
Query 1426 CGTTATCCC-AAAATGTCTGCAATGTGGTTCAAAGAGTTTTTGAAGA-A-A-GAAGATAT 1481
|||| |||| |||||||| || |||||||||||||| || ||||||| | | ||||| ||
Sbjct 1612 CGTT-TCCCGAAAATGTCGGCGATGTGGTTCAAAGAATTCTTGAAGAGAGAAGAAGAAAT 1670
Query 1482 CGAGGATTCGGA-GAAGGAAG-GCT-CGTTGAATTTTGTTGTTAACAA-GAAGAGGAAGA 1537
|| ||||| || |||| ||| | | ||| | || | || ||||| ||| | |||||
Sbjct 1671 TGAAGATTCAGAAGAAG-AAGAG-TACGT-G--TT--GAAGTCAACAATGAACAAGAAGA 1723
Query 1538 GATTCTTAACATCTTCTGGTTCATT---TTCCTGCTTTATACCTAAGATGTCTGAATCCT 1594
|||||||| | | ||||||||| ||| |||||||| ||||||||||||||||| |
Sbjct 1724 GATTCTTATTAGCAACTGGTTCATCAGCTTCATGCTTTATTCCTAAGATGTCTGAATCTT 1783
Query 1595 CGAAAGC 1601
| |||||
Sbjct 1784 CTAAAGC 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5