BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902514
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G60320.1 | Symbols: | Protein of unknown function (DUF630 a... 1759 0.0
> AT3G60320.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr3:22291886-22295371 REVERSE LENGTH=2721
Length=2721
Score = 1759 bits (952), Expect = 0.0
Identities = 1975/2452 (81%), Gaps = 137/2452 (6%)
Strand=Plus/Plus
Query 1 ATGGGATGTGCAGCGTCGAAGCTCGATAACGAAGACACTGTTCGGCGATGCAAAGATCGC 60
||||||||||| ||||| ||||||||||||||||| |||| ||||| || || ||||||
Sbjct 144 ATGGGATGTGCGGCGTCCAAGCTCGATAACGAAGATGCTGTACGGCGTTGTAAGGATCGC 203
Query 61 CGTCGTCTCATGTCGGAATCTGT-TAACGCACGACATCACCTCGCTGCAGCTCACGCTGA 119
|| ||||| ||| ||| |||| | |||| || ||||| ||||| || |||||||| ||
Sbjct 204 CGCCGTCTGATGAAAGAAGCTGTCT-ACGCTCGTCATCATCTCGCCGCCGCTCACGCCGA 262
Query 120 TTACTGTAGATCGCTCCGTCTCACTGGATCTGCTCTTTCTTCTTTCGCCGCCGGTGAGCC 179
|||||| ||||||| ||| ||||||||||||||||||| || |||||| ||||||||||
Sbjct 263 TTACTGCCGATCGCTTCGTATCACTGGATCTGCTCTTTCCTCATTCGCCTCCGGTGAGCC 322
Query 180 TCTAGCTGTATCAGATCAGACTCCGGCCGTTTTTCTCCAT--T-CTACTCCGCCGCCGTC 236
||| ||||||| ||||| |||||||| ||||| |||||| | | |||| |||| ||
Sbjct 323 TCTCTCTGTATCTGATCAAACTCCGGCTGTTTTCCTCCATACTCCCCCTCCTCCGCTTTC 382
Query 237 TCAACACTCATCC-GCCAAATTTGTACCTCCGTCACCTGCTCCTTCTTCAGT-ATATACT 294
| |||| || ||| || |||||||| ||| | || | | | ||| | || | ||
Sbjct 383 TGAACAATC-TCCGGCTAAATTTGTCCCT-C--CA-C-G-TTTTTC-GCCGTCGCCTGCT 434
Query 295 CC-GCCGCCG--GCTCCTCCTTC-ACGGTCTCCTTCCGTTGCTAGCTCAAAACTA-CCTC 349
|| | | | ||||||||| || |||||||||||| || || || || | | |||
Sbjct 435 CCTTCTTCTGTTTATCCTCCTTCGAC-GTCTCCTTCCGTCGCCAGTTCTAAGC-AGCCTT 492
Query 350 CAGTTC-T-TTCAGCTTCATCTAATCGGCGCCGGAaacaacaacaacaacaacaacCTAA 407
||| || | | || | || || ||||| |||||| | |||| |||| ||| ||||| |
Sbjct 493 CAG-TCATGTCCA-CCTCTTCCAATCGACGCCGG--A-AACAGCAAC--CAA-AACCT-A 543
Query 408 G-TTGCCTCATATTCTCTC---G---AGT-C--CTTCGTCT------AGTGAGAGATCCA 451
| |||||||||||||||| | ||| | |||| ||| |||||||||||||
Sbjct 544 GACTGCCTCATATTCTCTCGGAGTCAAGTCCTTCTTCTTCTCCGAGAAGTGAGAGATCCA 603
Query 452 ATTTCATGCCGAGTTTCT-TCCCTACTGCTTACCAGAACTCTACTTACTCGGCGACTCCT 510
|||||||||| | ||| | |||| | |||||| ||||||||||||||||| || ||||||
Sbjct 604 ATTTCATGCCCAATTTGTATCCC-AGTGCTTATCAGAACTCTACTTACTCCGCTACTCCT 662
Query 511 TCTCAAGCTTCTTCCGTTTGGAATTGGGAGAATTTTTACCCTCCTTCACCTCCCGATTCC 570
||||| || || ||||| ||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 663 TCTCATGCCTCCTCCGTCTGGAACTGGGAGAATTTCTACCCTCCTTCTCCTCCCGATTCC 722
Query 571 GAATTCTTCAACCGGAAATCTCAAGAGAGGAAACAACAGGACCGCT-ATGGCGATCTGGC 629
|||||||||||| |||| ||||||||| ||||| | | ||| | || |||| |
Sbjct 723 GAATTCTTCAACAGGAAGGCTCAAGAGAAGAAAC-ATAACTCCGATAAT--CGAT-T--- 775
Query 630 CGACGGCGAGGATACCGAAACAGAGAGATCGGAGCATGATTTTTTC--CA-TATGAAG-- 684
| ||| ||||||||| ||||||| ||| || ||| ||||||| ||| || | ||||
Sbjct 776 CAACGACGAGGATACGGAAACAGTGAGGTCAGAGTATGATTTCTTCGACACGAGGAAGCA 835
Query 685 -AAGCAGAAGCAGTTCGAGTCTATGA-AAAGTGCTGCGGTGGAGGAGGAAG-TGGAGACA 741
||||||||||||||||| || |||| ||| | | ||||||||| | || ||||||
Sbjct 836 AAAGCAGAAGCAGTTCGAATCAATGAGAAA-T-C--AGGTGGAGGAAG-AGACGGAGACG 890
Query 742 GAGAGAGAGGAAGTGCAGTGTAGCGAATGGGATGATCACGATCATTACAGTACGACGAGC 801
|||||||||||||| |||||||| |||||||| ||||||||||||||||| || ||||||
Sbjct 891 GAGAGAGAGGAAGTACAGTGTAGTGAATGGGAGGATCACGATCATTACAGCACCACGAGC 950
Query 802 TCATCCGACGCTGCGGAGGAGGAGGAGGAAGAAGAGGATAGAGAGTCAATGTCTGAGATC 861
|| || ||||| |||||||| ||||| ||||| || |||||||| ||||| || ||| ||
Sbjct 951 TCCTCGGACGCAGCGGAGGAAGAGGAAGAAGATGATGATAGAGAATCAATTTCCGAGGTC 1010
Query 862 GGGACGCGTTCTGACTTTGGATCTTCCGTGAGGACTAGTTCGATGAGACGGCAGTATCAC 921
||||| || || || ||||||||| | ||||| | || |||||||||||||| ||||
Sbjct 1011 GGGACACGCTCCGAGTTTGGATCTACGGTGAGAAGTAATTCGATGAGACGGC---ATCAT 1067
Query 922 CAGCAGCAGCAGCAGCCCCAAGCAATGCCGC-AGGAGTATGGAGGTGTTGCACAGGAG-A 979
|| | || | | | | | ||||||||| || | || || || | || ||| || |
Sbjct 1068 CA--A-CA--A-C--CTTC-ACCAATGCCGCAAGTA-TACGGCGGCGCTGAACA-AAGTA 1116
Query 980 AGTATCG-CAAAGCAGATGACGCGACG---TCTTCCGGCAGCTACCGAGGCGGAGGAG-- 1033
| ||| | ||||||||||| || ||| ||||| || ||||| ||||||||||||
Sbjct 1117 AATAT-GATAAAGCAGATGATGCTACGATATCTTCTGGTAGCTATAGAGGCGGAGGAGAT 1175
Query 1034 A-----G--ATG--G-TGGT-G--AGGCATAGAGATTTGAAGGAGATTGTTGATGCGATT 1080
| | ||| | |||| | |||||||| |||||||| || || | ||||| |||
Sbjct 1176 ATCGCTGACATGAAGATGGTAGTTAGGCATAGGGATTTGAAAGAAATCATCGATGCCATT 1235
Query 1081 AAGGAGAATTTCGACAAGGCGGCTTCCGCAGGCGATCAAGTCTCTCAGATGCTTC-ATCT 1139
||||| |||||||| ||||| ||| || |||| || |||||||||||||||| || | ||
Sbjct 1236 AAGGAAAATTTCGATAAGGCTGCTGCCTCAGGGGAGCAAGTCTCTCAGATGC-TCGAGCT 1294
Query 1140 TGGCAGGGCTCAGCTCGATCGCAGTTTCAGCCAATTGAAGAAGACGGTGATTCATTCGAG 1199
|||||| ||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1295 TGGCAGAGCTGAGCTCGATCGTAGTTTCAGCCAATTGAAGAAAACGGTGATTCATTCGAG 1354
Query 1200 TAGTGTATTGAGTAACCTGAGCTCAACTTGGACTTCAAAGCCGCCATTGGAAGTCAAGTA 1259
|||| |||| || ||| ||||||| || ||||| || ||||||||||||| |||||||||
Sbjct 1355 TAGTTTATTAAGCAACTTGAGCTCGACATGGACCTCGAAGCCGCCATTGGCAGTCAAGTA 1414
Query 1260 CAGGCTTGACACAACCGCATTGGACCAACCGGGCGGCCCCAAGAGCCTTTCTTCCAGTCT 1319
||| | ||||| || || |||| |||||| | | | |||||||||| ||||| |||
Sbjct 1415 TAGGATAGACACGACTGCGCTGGATCAACCGAACAGTTCGAAGAGCCTTTGTTCCACTCT 1474
Query 1320 AGACCGCCTCTTGGCATGGGAAAAGAAACTCTACGAGGAAGTCAAGGCTAGAGAAGGGTT 1379
||||| |||||||||||||| ||||| || || || ||| | |||||||||||||| ||
Sbjct 1475 TGACCGTCTCTTGGCATGGGAGAAGAAGCTTTATGAAGAAATTAAGGCTAGAGAAGGTTT 1534
Query 1380 GAAGATTGAACATGAAAAGAAGTTGTCAAAGCTTCAAAGCCAAGAGTACAAAGGAGAGAA 1439
|||||||| ||||| |||||||| ||| |||||||||||||||| || ||||| ||| |
Sbjct 1535 CAAGATTGAGCATGAGAAGAAGTTATCACAGCTTCAAAGCCAAGAATATAAAGGGGAGGA 1594
Query 1440 TG-AGATTAAGCTAGACAAGACAAAGGCCTCTATAACGAGGTTACAATCTCTTATTATTG 1498
|| || |||| |||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 1595 TGAAG-CTAAGTTAGACAAGACAAAGGCCTCTATAACGAGGTTACAGTCACTGATCATTG 1653
Query 1499 TTACTTCCCAGGCCGTCAGC-ACAACATCTACTGCAATTATCCGCCTTCGAGATACTGAT 1557
||||||| || || || | | || ||||||||||| || ||||| ||||| ||||||||
Sbjct 1654 TTACTTCTCAAGCTGTTA-CTACCACATCTACTGCCATCATCCGTCTTCGTGATACTGAC 1712
Query 1558 CTTGTTCCGCAGCTCGTTGAACTCTGTCATGGCTTCATGTACATGTGGAAATCAATGCAT 1617
|||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1713 CTTGTTCCACAACTCGTTGAGCTCTGTCATGGCTTTATGTACATGTGGAAATCTATGCAT 1772
Query 1618 CAATTCCACGAAATTCAGAACCA-CATCGTACAGCAAGTTCAGGGGCTCATTAACAGGTC 1676
|||| ||| || | ||||||| | |||||| ||||||| | ||||||||||||||| ||
Sbjct 1773 CAATACCATGAGACTCAGAAC-AGCATCGTGGAGCAAGTCCGGGGGCTCATTAACAGATC 1831
Query 1677 AGGCAAAGGGGAATCAACATCTGAACTACACCGACAAGCAACACGCGACTTGGAAACAGC 1736
|||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| ||||
Sbjct 1832 GGGCAAAGGCGAATCAACATCTGAGCTACACCGACAAGCTACACGTGACTTGGAATCAGC 1891
Query 1737 TGTGTCTT-TATGGCACTCCAGTTTCTGTCGGCTGATTAAATTCCAACGAGACTTCATAC 1795
||| |||| | ||||||||||||||| || | |||||||||||||||| ||||||||||
Sbjct 1892 TGTCTCTTCT-TGGCACTCCAGTTTCAGTAGTTTGATTAAATTCCAACGTGACTTCATAC 1950
Query 1796 ATTCGGTTCAAGCCTGGTTCAAGCTAACCCTTCTTCCAGTTTGCCAAGACGACAAT-CCA 1854
| || ||||| |||||||||||||| ||||||||||| ||||||||||| ||| |||
Sbjct 1951 ACTCAGTTCACGCCTGGTTCAAGCTGACCCTTCTTCCGGTTTGCCAAGAAGACGCCGCCA 2010
Query 1855 AG--TCACAAAGAGCCGGTAGACGCCTACGCATTTTGCGATGAGTGGAAGCTTACTCTAG 1912
| ||||||||||||| | || || ||||| || |||||||||||||| || ||||||
Sbjct 2011 ATCATCACAAAGAGCCGCTCGATGCTTACGCCTTCTGCGATGAGTGGAAACTCGCTCTAG 2070
Query 1913 ACCG-AGTCCCGGACACAGTGGCTTCAGAAGCAATCAAAAGCTTCATCCACGTTGTTCAA 1971
| || | ||||| | ||||| || || || |||||||| ||||||||| ||||||| ||
Sbjct 2071 ATCGTATTCCCG-ATACAGTTGCATCTGAGGCAATCAAGAGCTTCATCAACGTTGTACAC 2129
Query 1972 GTGATATCCGCGAAACAATCCGAGGAGCTA-AAGATAAAGAAACGAACCGAATCAGCATC 2030
||||||||||| |||||| |||| || | | |||||||||||| |||| |||||||||||
Sbjct 2130 GTGATATCCGCAAAACAAGCCGATGAAC-ACAAGATAAAGAAAAGAACAGAATCAGCATC 2188
Query 2031 AAAGGAGCTTGAGAAGAAAGCTTCATCGCTTAGAAACATCGAAAGGAAATACTATCAGTC 2090
||| |||||||||||||| ||||| ||| |||||||| | || || |||||||| |||||
Sbjct 2189 AAAAGAGCTTGAGAAGAAGGCTTCGTCGGTTAGAAACCTAGAGAGAAAATACTACCAGTC 2248
Query 2091 ATACTCCACGGTTGG-GTTTGGTCTCCCAGA-TGCAGGACCAGACAACGGACACATGTTA 2148
|||||| | |||||| || ||| | ||||| | ||||||| || ||| ||||||||||
Sbjct 2249 ATACTCAATGGTTGGTGTC-GGTTTACCAGAGT-CAGGACCCGATAACCAACACATGTTA 2306
Query 2149 GATGCTCGGGACCCACTCA-CGGAGAAAAAGTTAGAGCTAG-GAGCATGCCAGAGAAGAG 2206
|| ||||| ||||| | | || | ||||||| |||||| | | | ||||| || ||||
Sbjct 2307 GACGCTCGAGACCCGTTAAGCG-ATAAAAAGTCAGAGCTTGCG-GTTTGCCAAAGGAGAG 2364
Query 2207 TGGAGGAAGAAATGCTGAAGCATTCAAAGGCAATAGAAGTAACAAGAGCCATGACGCTGA 2266
| |||||||| ||| |||| | ||||||||||||||||| |||||||||||||| |||
Sbjct 2365 TTGAGGAAGAGATGGTGAAATACTCAAAGGCAATAGAAGTGACAAGAGCCATGACTTTGA 2424
Query 2267 ATAA-CTTGCAGACAGGTTTGCCTGGTGTGTTCCAAGCTTTGACGAGTTTCTCTGCTCTG 2325
|||| || ||||||||| |||||||||||||||||| |||| || |||||||||||| ||
Sbjct 2425 ATAATCT-GCAGACAGGGTTGCCTGGTGTGTTCCAATCTTTAACAAGTTTCTCTGCTTTG 2483
Query 2326 TTCACGGAGTC-CTTACAAACGGTATGCACTCGCTCATACTCCATCAAATAG 2376
|||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 2484 TTCATGGAGTCTCTT-CAAACGGTATGCACTCGCTCATACTCTATCAAATAG 2534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5