BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902517
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1293 0.0
> AT2G44850.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G45380.1); Has 138 Blast hits to 138 proteins
in 53 species: Archae - 0; Bacteria - 0; Metazoa - 73;
Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink). | chr2:18498672-18500823 FORWARD LENGTH=1203
Length=1203
Score = 1293 bits (700), Expect = 0.0
Identities = 816/870 (94%), Gaps = 15/870 (2%)
Strand=Plus/Plus
Query 121 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GTGCCTTCTGCAAATGCAATATTCTTTCATGGTGACAAAGTTCAAGACACTGGGAATCAT 408
Query 181 GTGATTGAGAGGCTATATGATTTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 240
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 409 GTGATTGAGAGGCTCTATGATCTGCAGAAAGTAGCTGAAATCATTGTTTCTAAATTTGGC 468
Query 241 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTCTTTTTAGTGGACCATTTGCTATCTAC 300
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 469 AACTCTGTTAATGCTTGGGTTGTTGAAGCTTCTGTCTTTAATGGACCATTTGCTATCTAC 528
Query 301 AAAGACTTTGTTCCATCAGTGAATCACAAGGGAGCACCAAAATCTTATTCCCCAGTTGGC 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 529 AAAGACTTTGTTCCATCAGTGAATCACATGGGAGCACCAAAATCTTATTCCCCAGTTGGC 588
Query 361 TTCCCAGCTTCTTCATCAGTTGTCTCCCTCTTATCTAGTTGCTTCCAGGCGTCAAAGAAC 420
|||||||||||||||||| ||||||||||||||||||||||| |||| | | |
Sbjct 589 TTCCCAGCTTCTTCATCAATTGTCTCCCTCTTATCTAGTTGCCTCCA----T----G-AG 639
Query 421 CTCATTTTAAAGGAAGGCAAAGAAGTGTGTTTGATAAACCAGATTGCATCAGTTCATCAC 480
| | || |||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 640 GT-A--TTGAAGGAAGGCACTGATGTGTGTTTGATAGACCAGATTGCATCAGTTCATCAC 696
Query 481 TGTCCCAGAACTATTGTTCTTGGATTTAGCAAAGGTGGAGTTGTGATTAACCAGCTCATG 540
||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 697 TGTCCCAAAACTATTGTGCTTGGATTTAGCAAGGGTGGAGTTGTGATGAACCAGCTCATG 756
Query 541 AGTGAGATCAGTTCATTGGATACAAACTTTGCGGAAACTACATCTGCAACGGTAGAAGAA 600
|||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||||||||
Sbjct 757 AGTGAGATCAGTTCCTTGGATACCAACTTTGCGAAAACTTCATCTGCAATGGTAGAAGAA 816
Query 601 CCTACGAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 660
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCTACCAGCCAGCATGAAAAGATTCAGATCATTCCAGCCTCCAAAGAAAGCTTCCTCAAC 876
Query 661 AGCATTTCTGAAGTTCATTATATCGATGTAGGACTGAACTCTTCTGGTGCCTACATTACG 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 877 AGCATTTCTGAAGTTCATTATATAGATGTAGGACTGAACTCTTCTGGTGCCTACATTACT 936
Query 721 GATCACAATGTCGTGCAGAGAATCTCTCAACGCCTCGCACGAAGAACAGACTCGCTACTA 780
|||||||||||||||||||||||||| |||||||| |||||| | |||||||| |||
Sbjct 937 GATCACAATGTCGTGCAGAGAATCTCCCAACGCCTTGCACGAGGTGCAGACTCG---CTA 993
Query 781 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCAGCGTGGCTGGATTCGC 840
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 994 CGCATTGTCATTCATGGAACTCCTAGGCAGTGGTGTGATGAGCTGCGAGGCTGGATTCGC 1053
Query 841 AAGGAAAAAGATGACTTGGTTCGTTTGCTCGAAGCTGAAACTGAAAATTCCGGTGGTAAA 900
|||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 1054 AAGGAAAAAGATGAGTTGGTTCGTTTGCTCAAAGCTGAAACTGAGAATTCCGGTGGGAAA 1113
Query 901 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CTACAGGTCTGTGAAAGGTTCTATTTTTCTGATAGACTTGCTGATTTGCAAATGCACTTT 1173
Query 961 GAGATAATTGATGCTATGGATGTCTCCTAA 990
||||||||||||||||||||||||||||||
Sbjct 1174 GAGATAATTGATGCTATGGATGTCTCCTAA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48475951855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5