BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902529
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44970.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2446 0.0
> AT2G44970.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr2:18548813-18552159 REVERSE LENGTH=1838
Length=1838
Score = 2446 bits (1324), Expect = 0.0
Identities = 1460/1524 (96%), Gaps = 15/1524 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCGTTTTGATCCCACATTCCTAAAGCTCCAGAAATTGATCAGAATGGGAGAAGCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 141 ATGTTTCGTTTTGATCCCACATTCCTAAAGCTCCAGAAATTGATCAAAATGGGAGAAGCT 200
Query 61 GGTCAATCCAGAGACGGAGAATCTGTCACGCCTCTTGTTGGCGGTGG-AACTGGGGACAA 119
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 201 GGTCAATCCAGAGACGGAGAATCTGTCACGCCTCTTGTTGGCGGTGGTAA-TGGGGACAA 259
Query 120 TGCGGTTGCACCACAAGTGTTTAATTCTTTACCAGCTCTCAATGAAGCTGCTTCTTATAT 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 260 TGCGGTTGCACCACAAGTGTTTAATTCTTTACCAGCTCTTAATGAAGCTGCTTCTTATAT 319
Query 180 AACCCAAGCAACGTCTTACTT-GGGCAGCTGTTTTTCTGACTATTCAGTTGAATATGGTG 238
||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 320 AACTCAAGCAACGTCTTACTTAGGG-AGCTGTTTTTCTGACTATTCAGTAGAATATGGTG 378
Query 239 GCAAGGATTCCTGTAATTCTATTTCACACCCCCATGAGTTGATAAGATCAACATCAGGAG 298
||||||| | | ||||||| ||||||||||||||| || ||||||| || ||||
Sbjct 379 GCAAGGA------T-A--CTATTTCCCACCCCCATGAGTTGTTACGATCAACTTCCGGAG 429
Query 299 TTGATGGGAATTCCCCAGTGAGTGTATGCATTTCGCCTGGTGAAAGGTTTTCAACTTCTT 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTGACGGGAATTCCCCAGTGAGTGTATGCATTTCGCCTGGTGAAAGGTTTTCAACTTCTT 489
Query 359 CAGAGGCATCTACGTCTGCTGCCAACAGCCCGTCGAGGGAATCTACAGAGACTCTGCCTC 418
||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 490 CAGAGGCATCTACATCTGATGCCAACAGCCCGTCGAGGGAATCTACAGAGATTCTGCCAC 549
Query 419 AGGCAACAAATGCAATAGTGACTTCGAATCGGTTAGGTTTTAATGGAATTTCGATGTTCC 478
||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 550 AGGCAACAAATGCAATAGTGACTTCGAATCGGTTAAATTTAAATGGAATTTCAATGTTCC 609
Query 479 AAGGGCTCATTGAGCGGGCACGGAGGACTGTCCGTGGCTCGGCAGATGACATAGGATGGT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 AAGGGCTCATTGAGCGGGCACGGAGGACTGTTCGTGGCTCGGCAGATGACATAGGATGGT 669
Query 539 TACAGCGTGCCCCGGAGATGCCTCCTGTTGAAGATGGAACTGATAGGTTCAATAAAATTC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TACAGCGTGCCCCGGAGATGCCTCCTGTTGAAGATGGAACTGATAGGTTCAATAAAATTC 729
Query 599 TGGAGGACATCGGGCATGGTGTACACAGGCTTCCAAATACAGTGGTGTACTTGTTGGTTC 658
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 730 TGGAAGACATCGGGCATGGTGTACACAGGCTTCCAAATACAGTGGTGTACTTATTGGTTC 789
Query 659 CTGGTCTTTTCAGCAATCATGGACCTCTATATTTTGTGGATACGAAAACGAAATTCTCAA 718
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CAGGTCTTTTCAGCAATCATGGACCTCTATATTTTGTGGATACGAAAACGAAATTCTCAA 849
Query 719 AGATGGGTTTGGCCTGTCATATTGCGAAGATTCACAGTGAGTCTTCGGTTGAGAAAAATG 778
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 850 AGATGGGTTTGGCGTGTCATATTGCGAAGATTCACAGCGAGTCCTCGGTTGAGAAAAATG 909
Query 779 CAAGAGAGATAAAGGAATACATAGAGGAACTCTGTTGGGGATCTAATAAGCGGGTTCTAC 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CGAGAGAGATAAAGGAATACATAGAGGAACTCTGTTGGGGATCTAATAAGCGGGTTCTAC 969
Query 839 TTCTTGGGCATAGCAAAGGAGGCATAGATGCAGCTGCTGCTTTATCACTATACTGGCCTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TTCTTGGGCATAGCAAAGGAGGCATAGATGCAGCTGCTGCTTTATCACTATACTGGCCTG 1029
Query 899 AACTAAAGGATAAGGTCGCTGGTTTGGTATTGGCGCAGAGTCCATATGGTGGAAGCCCAA 958
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1030 AACTAAAGGATAAGGTCGCTGGGTTGGTACTGGCGCAGAGTCCATATGGTGGAAGCCCAA 1089
Query 959 TAGCTACAGATATCCTCCGTGAAGGACAACTAGGTGATTACGTCAATTTGAGAAAGATGA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TAGCTACAGATATCCTCCGTGAAGGACAACTAGGTGATTACGTCAATTTGAGAAAGATGA 1149
Query 1019 TGGAGATTCTGATCTCCAAAGTCATAAAGGGTGACATTCAAGCTTTGGAAGATTTAACCT 1078
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1150 TGGAGATTCTAATCTCCAAAGTCATAAAGGGTGACATTCAAGCATTGGAAGATTTAACAT 1209
Query 1079 ATGAGAGAAGAAAAGAGTTCTTGAAGAATCATCCGCTTCCCCGAGAACTCCCCACGGTTT 1138
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ACGAGAGAAGAAAAGAATTCTTGAAGAATCATCCGCTTCCCCGAGAACTCCCCACGGTTT 1269
Query 1139 CATTCCGCACAGAAGCTAGCATTAGCCCAGCGGTTCTAGCCACTTTGTCACACGTAGCAC 1198
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1270 CATTCCGCACAGAAGCTAGCATTAGCCCAGCGGTTCTATCCACTTTATCACACGTAGCAC 1329
Query 1199 ACGCTGAACTCCCTCTGACAAACCAAGCCGCAAAACTGCCAGTGGTAATGCCACTAGGTG 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1330 ACGCTGAACTTCCTCTGACAAACCAAGCCGCAAAACTGCCAGTGGTAATGCCACTTGGTG 1389
Query 1259 CTGCAATGGCTGCTTGCGCTCAGCTGCTTCAAGTCAGATACGGTGAAAAGAGTGACGGGC 1318
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1390 CTGCAATGGCTGCTTGCGCTCAGCTACTTCAAGTCAGATACGGTGAAAAGAGTGACGGGC 1449
Query 1319 TAGTGACTTGCTGTGACGCAGAGGTTCCTGGTTCTGTGGTTGTTAGACCCAAACGTAAAC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 TAGTGACTTGCTGTGACGCAGAGGTTCCTGGTTCTGTGGTTGTTAGACCCAAACGTAAAC 1509
Query 1379 TAGACCATGCCTGGATGGTTTACTCTTCCTTAAACGAGGTTGCTTTAGAAGCTGATGCTG 1438
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1510 TAGACCATGCCTGGATGGTGTACTCTTCCTTGAACGAGGTTCCTTTAGAAGCTGATGCTG 1569
Query 1439 CTCAAGTTTGTGAGGCTCTCTTGACATTGCTTGTCCAAGTTGAGGAAGAGAAGCAACAAA 1498
||||||||||||| || ||||| || |||||||||||||||||| |||||| ||||||||
Sbjct 1570 CTCAAGTTTGTGAAGCGCTCTTAACTTTGCTTGTCCAAGTTGAGCAAGAGAGGCAACAAA 1629
Query 1499 AACTTGCGACCAAAAA-CGATTGA 1521
|||| || || ||||| |||||||
Sbjct 1630 AACTCGCAAC-AAAAATCGATTGA 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5