BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902531
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44990.1 | Symbols: CCD7, MAX3, ATCCD7 | carotenoid cleavage... 2760 0.0
> AT2G44990.1 | Symbols: CCD7, MAX3, ATCCD7 | carotenoid cleavage
dioxygenase 7 | chr2:18558938-18561621 FORWARD LENGTH=1890
Length=1890
Score = 2760 bits (1494), Expect = 0.0
Identities = 1699/1798 (94%), Gaps = 13/1798 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCTCCCTATCCCGCCGAAATTTCTTCTACCGCTAAAATCTCCACCGATTCATCAT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTCCCTATCCCGCCGAAATTTCTTCCACCGCTAAAATCTCCACCGATTCATCAT 60
Query 61 CACCAAGCTCCGCCACCGCTTGCACCGCCACGAGCCGCAATATCAATATCTATACCAGAA 120
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CACCAAACTCCGCCACCGCTTGCACCTCCACGAGCCGCAATATCAATATCTATACCAGAC 120
Query 121 ACCGGTTTAGGACGTACGGGAACCATCATCGACGAGTCCACGTCATCAGCTTTCCGTGAC 180
||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||
Sbjct 121 ACCGGTTTAGGACGTACCGGTACCATCCTCGACGAGTCCACGTCTTCAGCTTTCCGTGAT 180
Query 181 TACCAATCTTTATTCGTATCACAACGCTCCGAGAC-AGTCGAACCGGTCGTAATTAAACC 239
||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||
Sbjct 181 TACCAATCTTTATTCGTGTCACAACGTTCCGAGACTA-TCGAACCGGTCGTAATTAAACC 239
Query 240 AATCGATGGCTCAATACCGGTTGATTTCCCTTCCGGTACGTATTACTTAGCCGGTCCAGG 299
|||||| || |||||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 240 AATCGAAGGTTCAATACCGGTTAACTTCCCTTCCGGTACATACTACTTAGCCGGTCCAGG 299
Query 300 ACTATTCACTGACGACCATGGCTCAACGGTCCATCCTTTAGACGGTCACGGTTATCTCCG 359
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ACTATTTACTGACGACCATGGCTCAACGGTTCATCCTTTAGACGGTCACGGTTATCTCCG 359
Query 360 TGCGTTTCACATCGACGGTAATAAACGAAAAGCCACTTTCACGGCGAAGTATGTTAAAAC 419
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 TGCGTTTCACATCGACGGTAACAAACGGAAAGCCACTTTCACGGCGAAGTACGTTAAAAC 419
Query 420 AGAAGCTAAAGAAGAAGAGCACGATCCTGTAACTGACACGTGGCGGTTCACTCATAGAGG 479
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGAAGCTAAAAAAGAAGAGCACGATCCTGTAACTGACACGTGGCGGTTCACTCATAGAGG 479
Query 480 TCCTTTCTCTGTGTTAAAAGGCGGGAAAAGATTTGGAAACACGAAAGTGATGAAAAACGT 539
||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TCCTTTCTCGGTGTTGAAAGGAGGGAAGAGATTTGGAAACACGAAAGTGATGAAAAACGT 539
Query 540 GGCCAATACTAGCGTTTTGAAATGGGCTGGGCGGTTGCTTTGTTTATGGGAAGGTGGTGA 599
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GGCTAATACTAGCGTTTTGAAATGGGCTGGGCGATTGCTTTGTTTATGGGAAGGTGGTGA 599
Query 600 ACCGTACGAGATTGAATCGGGATCGTTGGATACCGTCGGGAGATTTAACGTCGAGATCAA 659
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 600 ACCGTACGAGATTGAATCTGGATCGTTGGATACCGTCGGAAGATTTAACGTCGAGAACAA 659
Query 660 CGGTTGtg-atgatgatgatgatgGTGATTCTTCCGACAGAGATTTATCTGGTCATGATA 718
|||||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 CGGTTGTGAATCTTG-TGATGATGATGATTCTTCCGACAGAGATTTATCTGGTCATGATA 718
Query 719 TATGGGACACAGCCGCAGATTTGTTGAAACCCATACTTCAAGGAGTATTTAAGATGCCAC 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TATGGGACACAGCCGCAGATTTGTTGAAACCCATACTTCAAGGTGTATTTAAGATGCCAC 778
Query 779 CGAAACGGTTCTTGTCACATTACAAAGTCGACGGTCGAAGAAATAGACTTTTAACGGTCA 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CGAAACGGTTCTTGTCACATTACAAAGTCGACGGTCGAAGAAAAAGACTTTTAACGGTCA 838
Query 839 CTTGCAACGCTGAAGATATGCTTTTACCTCGAAGCAACTTCTCATTTTGTGAGTATGATT 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 CTTGCAACGCTGAAGATATGCTTTTACCTCGAAGCAACTTCACATTTTGTGAGTATGATT 898
Query 899 CGGAATTCAAGTTGATACAAACGAGAGAATTCAAGATCGATGATCACATGATGATTCATG 958
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 899 CGGAATTCAAGTTGATACAAACGAAAGAATTCAAGATCGATGATCATATGATGATTCATG 958
Query 959 ATTGGGCATTCACGGACACTCACTACATACTATTTGCCAACCGAGTCAAGCTTGATCCAC 1018
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 959 ATTGGGCATTCACGGATACTCACTACATACTCTTTGCCAACCGAGTCAAGCTTAATCCAA 1018
Query 1019 TTGGTTCCATAGCGGCTATGTGCGGCATGTCACCGATGGTATCAGCGTTATCGTTGAACC 1078
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1019 TAGGTTCCATAGCGGCTATGTGCGGAATGTCACCAATGGTATCAGCGTTATCGTTAAACC 1078
Query 1079 CTAGCAACGAGAGTTCCCCGATTTATATTCTCCCTAGGTTTTCTGAGAAAT---CTATGG 1135
| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 1079 CAAGCAACGAGAGTTCTCCGATTTATATTCTCCCTAGGTTTTCTGATAAATATTCTAGGG 1138
Query 1136 G-GGATCGAGACTGGAGAGTTCCTGTCGAAGTGTCTTCTCAATTGTGGCTAATACACTCC 1194
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 GAGG-TCGAGACTGGAGAGTTCCTGTCGAAGTGTCTTCTCAATTATGGCTAATACACTCC 1197
Query 1195 GGAAACGCTTATGAGACTAGAGAGGATAACGGCGATTTAAAGATTCAGATACAAGCGTCT 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1198 GGAAACGCTTATGAGACTAGAGAGGATAACGGCGATTTAAAGATTCAGATACAAGCTTCC 1257
Query 1255 GCTTGTTCCTACC-AGTGGTTCGATTTCCAGAAAATGTTTGGCTATGATTGGCAAAGGAA 1313
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 GCTTGTTCTTACCGA-TGGTTCGATTTCCAGAAAATGTTTGGCTATGATTGGCAAAGCAA 1316
Query 1314 CAATCTGGATCCTTCTGTTATGAATCTGAATCGCGGGGATGACAAACTACTCCCTCATCT 1373
||| ||||||||||||||||||||||| || || || || ||||||||||||||||||||
Sbjct 1317 CAAGCTGGATCCTTCTGTTATGAATCTAAACCGTGGCGACGACAAACTACTCCCTCATCT 1376
Query 1374 AGTTAAGGTGTCTATGACATTGGACTCTTTTGGCGATTGCAAGAGTTGTGATGTAGAGCC 1433
|||||||||||||||||| ||||||||| || | ||||| |||||||||||||||||
Sbjct 1377 AGTTAAGGTGTCTATGACTTTGGACTCTACCGGAAACTGCAATAGTTGTGATGTAGAGCC 1436
Query 1434 TCTAAACGGCTGGAACAAGCCATCAGATTTTCCGGTTATAAACTCATCCTGGTCCGGAAA 1493
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TCTAAACGGGTGGAACAAGCCGTCAGATTTTCCGGTTATAAACTCATCCTGGTCCGGAAA 1496
Query 1494 AAAGAACAAGTACATGTACTCTGCAGCCTCTTCGGGAACTCGAGGTGAACTTCCCCATTT 1553
|||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1497 AAAGAACAAGTACATGTACTCTGCTGCCTCGTCGGGAACTCGAAGTGAACTTCCCCATTT 1556
Query 1554 CCCATTCGACATGGTCGTGAAGTTTGACTTAGACTCAAACCTCGTCCGTACTTGGTCTAC 1613
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TCCATTCGACATGGTCGTGAAATTTGACTTAGACTCAAACCTCGTCCGTACTTGGTCTAC 1616
Query 1614 CGGGGCTAGAAGATTCGTTGGTGAGCCCATGTTTGTCCCAAGAAAA-TCCGATGAAGAAG 1672
||| ||||||||||||||||||||||||||||||||||||| |||| || | ||||||||
Sbjct 1617 CGGAGCTAGAAGATTCGTTGGTGAGCCCATGTTTGTCCCAA-AAAACTCTGTTGAAGAAG 1675
Query 1673 GAGAAGAAGAGGACGATGGTTACATTCTCGTGGTTGAGTATGCGGTTTCGGTGGAGAGAT 1732
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1676 GAGAAGAAGAGGACGATGGTTACATTGTCGTGGTCGAGTATGCGGTTTCGGTGGAGAGAT 1735
Query 1733 GTTACCTTGTGATTTTGGATGCCAAGAAGATCGGTGAATCCGATGCGGTCGTGTCGAG 1790
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1736 GTTACCTAGTGATTTTGGATGCTAAGAAGATCGGTGAATCCGATGCGGTCGTGTCGAG 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91766596260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5