BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902555
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45220.1 | Symbols: | Plant invertase/pectin methylesterase... 2564 0.0
> AT2G45220.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr2:18644084-18646447 REVERSE LENGTH=1786
Length=1786
Score = 2564 bits (1388), Expect = 0.0
Identities = 1487/1536 (97%), Gaps = 2/1536 (0%)
Strand=Plus/Plus
Query 1 ATGATGGCTTTTCGAGCTTATATTATTACCTTTGTGTTCTTATGCATCCTCGTGGCATCG 60
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 54 ATGATGGCTTTTCGAGCTTATATTATTAACTTTGTGATCTTATGCATTCTCGTGGCATCG 113
Query 61 ACCGTTTCCGGGTACAACCAGAAAGACGTGAAAGCGTGGTGCAGCCAAACTCCAAACCCT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 114 ACCGTTTCCGGGTACAACCAGAAAGACGTGAAAGCATGGTGCAGCCAAACTCCAAACCCT 173
Query 121 AAACCTTGCGAGTATTTCTTAACCCATAACTCAAACAATAAACCCATAAAGTCTGAATCC 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 174 AAACCTTGCGAGTATTTCTTAACCCATAACTCAAACAATGAACCCATAAAGTCTGAATCC 233
Query 181 GAGTTCCTCGAAATCTCAATGAAACTCGCATTAGACCGAGCCGTCCTCGCCAAAATCCAC 240
||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 234 GAGTTTCTCAAAATCTCAATGAAACTCGTATTAGACCGAGCCATCCTCGCCAAAACCCAC 293
Query 241 GCGTTCACACTAGGACCAAAGTGCCGTGACACACGTGAAAAAGCAGCGTGGGAAGATTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GCGTTCACACTAGGACCAAAGTGCCGTGACACACGTGAAAAAGCAGCGTGGGAAGATTGT 353
Query 301 ATCAAGCTCTATGACCTCACCGTCTCTAAAATCAACGAGACAATGGACCCCAACGTGAAG 360
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 354 ATCAAGCTCTACGACCTCACCGTCTCTAAAATCAACGAGACAATGGACCCAAACGTGAAG 413
Query 361 TGCTCAAAAACT-GACGCGCAAACATGGCTAAGCACAGCTCTAACCAATCTCGACACGTG 419
||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 414 TGCTC-AAAACTCGACGCGCAAACATGGCTAAGCACGGCTCTAACCAATCTTGACACATG 472
Query 420 TCGAGCGGGGTTCTTAGAGCTCGGAGTTACCGATGTCGTCCTTCCTTTGATGTCAAACAA 479
|||||| |||||||||||||| || ||||||||| | |||||||||||||||||||||||
Sbjct 473 TCGAGCTGGGTTCTTAGAGCTTGGTGTTACCGATATTGTCCTTCCTTTGATGTCAAACAA 532
Query 480 CGTCTCGAATCTTCTATGCAACACACTCGCCATTAACAAAGTTCCTTTCAACTACACCCC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGTCTCGAATCTTCTATGCAACACACTCGCCATTAACAAAGTTCCTTTCAACTACACCCC 592
Query 540 ACCCGAGAAAGACGGGTTCCCTTCGTGGGTCAAACCTGGTGACCGGAAACTTTTGCAAAG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACCCGAGAAAGACGGGTTCCCTTCGTGGGTCAAACCTGGTGACCGGAAACTTTTGCAAAG 652
Query 600 CTCGACGCCAAAAGATAACGCAGTGGTGGCGAAAGACGGGTCTGGTAATTTCAAGACGAT 659
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 653 CTCGACGCCAAAAGATAACGCAGTGGTGGCGAAAGACGGATCTGGCAATTTTAAGACGAT 712
Query 660 AAAAGAAGCGATTGATGCTGCTTCGGGGAGTGGTAGGTTCGTGATATATGTGAAGCAAGG 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 713 AAAAGAAGCGATTGATGCTGCTTCGGGGAGTGGTAGGTTCGTTATATATGTGAAGCAAGG 772
Query 720 CGTTTACAGTGAGAATCTTGAGATTCGAAAAAAGAATGTTATGTTGAGAGGTGATGGTAT 779
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 773 CGTTTACAGTGAGAACCTTGAGATTCGGAAAAAGAATGTCATGTTGAGAGGTGATGGTAT 832
Query 780 AGGGAAGACGATTATTACCGGAAGCAAAAGTGTTGGAGGAGGAACGACAACGTTTAATTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 833 AGGGAAGACGATTATTACCGGAAGCAAAAGTGTTGGAGGAGGAACGACAACCTTTAACTC 892
Query 840 AGCTACTGTCGCTGCGGTCGGAGACGGGTTTATAGCTCGTGGGATCACGTTTCGAAACAC 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGCTACTGTCGCGGCGGTCGGAGACGGGTTTATAGCTCGTGGGATCACGTTTCGAAACAC 952
Query 900 GGCGGGTGCAAACAACGCACAAGCGGTAGCTCTAAGATCCGGGTCGGATCTATCCGTTTT 959
||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 953 GGCGGGTGCAAGCAACGAACAAGCGGTAGCTCTAAGATCCGGGTCGGATCTGTCAGTTTT 1012
Query 960 TTACCAATGCAGTTTCGAAGCTTACCAAGACACACTCTACGTTCACTCCAACCGTCAGTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTACCAATGCAGTTTCGAAGCTTACCAAGACACACTCTACGTTCACTCCAACCGTCAGTT 1072
Query 1020 TTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCTTCGGAAACGCAGCAGCGGT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 TTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCTTCGGAAACGCAGCCGCGGT 1132
Query 1080 TCTCCAGAACTGCAACATCTTCGCACGTCGTCCACGTAGTAAGACCAACACAATCACAGC 1139
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1133 TCTCCAGAACTGCAACATTTTCGCACGTCGTCCTCGTAGTAAGACCAACACAATCACAGC 1192
Query 1140 TCAAGGAAGATCCGACCCGAATCAAAACACGGGTATTATTATCCACAACTCTCGGGTCAC 1199
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1193 TCAAGGAAGATCCGACCCGAATCAAAACACGGGGATTATTATCCACAACTCTCGGGTCAC 1252
Query 1200 CGCCGCTTCGGATCTTCGACCCGTTTTGGGATCCACCAAGACTTATTTGGGTCGACCTTG 1259
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1253 GGCCGCTTCGGATCTTCGACCCGTTTTGGGATCCACAAAGACTTATTTGGGTAGACCTTG 1312
Query 1260 GAGACAATATTCTAGAACAGTTTTTATGAAGACTTCTCTTGATAGTTTGATTGATCCACG 1319
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GAGACAATATTCTAGGACGGTTTTTATGAAGACTTCTCTTGATAGTTTGATTGATCCACG 1372
Query 1320 TGGCTGGCTCGAGTGGGACGGTAATTTCGCTTTGAAGACTTTGTTCTATGCTGAGTTTCA 1379
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 TGGCTGGCTCGAGTGGGATGGTAATTTCGCTTTGAAGACTTTGTTCTATGCTGAGTTTCA 1432
Query 1380 AAATACGGGTCCGGGTGCTTCAACTTCGGGTCGGGTCACATGGCCAGGGTTTCGGGTCCT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 AAATACGGGTCCGGGTGCTTCAACTTCGGGTCGGGTCACATGGCCAGGGTTTCGGGTCCT 1492
Query 1440 TGGTTCTGCTTCAGAGGCTTCCAAGTTTACTGTTGGTACTTTCCTTGCCGGTAGCTCTTG 1499
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1493 TGGTTCTGCTTCAGAGGCTTCCAAGTTTACTGTTGGTACTTTCCTCGCCGGTGGCTCTTG 1552
Query 1500 GATTCCATCTACCGTGCCGTTCACTTCTGGTCTCTA 1535
||||||||||| ||||||||||||||||||||||||
Sbjct 1553 GATTCCATCTAGCGTGCCGTTCACTTCTGGTCTCTA 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5