BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902559
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45270.1 | Symbols: GCP1 | glycoprotease 1 | chr2:18666526-1... 2076 0.0
> AT2G45270.1 | Symbols: GCP1 | glycoprotease 1 | chr2:18666526-18669873
FORWARD LENGTH=2041
Length=2041
Score = 2076 bits (1124), Expect = 0.0
Identities = 1261/1328 (95%), Gaps = 5/1328 (0%)
Strand=Plus/Plus
Query 78 TAAACTTAGAACCAAAATCCCGACTTTCTCCTTAATCTCTCCTTCATCTTCACCCAATTT 137
||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 168 TAAGCTTAAAACCAAAACCCCGACTTTCTCGTTAATCTCTCCTTCATCTTCACCCAATTT 227
Query 138 TCAAAGGACACGTTTTTATTCTACCGGAACAAGAATCTACTACTCGTTACCCAATAGCGA 197
|||||||||||||||||||||||||| ||||||||| | | ||| |||||| |||||||
Sbjct 228 TCAAAGGACACGTTTTTATTCTACCGAAACAAGAAT-T--TCCTCCTTACCCTATAGCGA 284
Query 198 AAATTCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 257
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AAACCCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACAC 344
Query 258 TGCCGCAGCTGTTGTGAGAAGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 317
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TGCCGCAGCTGTTGTGAGAGGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGC 404
Query 318 AGAATTGCTTGCCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCA 377
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCG 464
Query 378 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAGAGCCAGTTTGACCGAGAAGGATCT 437
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 465 AGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCT 524
Query 438 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGCGTTGGTGTGCG 497
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 525 CTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGTGTTGGTGTGCG 584
Query 498 AAAGGCTCGTAGCGTTGCTGGTAACTTCAGTCTCCCAATTGTCGGGGTGCATCACATGGA 557
|||||| | || |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 585 CAAGGCTAGAAGAGTTGCTGGTAACTTCAGTCTCCCAATCGTTGGGGTGCATCACATGGA 644
Query 558 GGCTCATGCCCTTGTAGCTAGGTTAGTAGAGCAAGAATTAAGCTTTCCGTTCATGGCATT 617
||||||||| || || ||||| ||||| || |||||||||||||| || |||||||||||
Sbjct 645 GGCTCATGCTCTCGTTGCTAGATTAGTGGAACAAGAATTAAGCTTCCCTTTCATGGCATT 704
Query 618 GCTTATATCAGGAGGGCACAATCTGCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 677
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 705 GCTTATATCAGGAGGGCACAATCTTCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACA 764
Query 678 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCAAAATGGCT 737
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 765 ACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCTAAATGGCT 824
Query 738 CGGTCTTGATATGCGCAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 797
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CGGCCTCGATATGCACAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGA 884
Query 798 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTA 944
Query 858 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATCGATGCTAAATG 917
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 945 TGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATTGATGCTAAATG 1004
Query 918 TCCTGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATCGCCGCTTCTTT 977
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1005 TCCCGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATTGCCGCTTCTTT 1064
Query 978 CCAGCGAGTAGCTGTCTTGCATCTGGAGGAAAAGTGTGAGCGAGCAATAGACTGGGCACT 1037
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 1065 CCAGCGAGTAGCTGTCTTGCATCTGGAAGAAAAATGTGAGCGAGCAATAGACTGGGCA-T 1123
Query 1038 T-GAACTCGAGCCTTCTATAAAACATATGGTAGTCTCTGGTGGTGTTGCTTCAAACAAGT 1096
| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1124 TAGAACTAGAGCCTTCTATTAAACATATGGTAATCTCTGGTGGTGTTGCTTCAAACAAGT 1183
Query 1097 ATGTACGACTCCGACTCAATAATATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1156
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1184 ATGTACGACTCCGACTTAATAACATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTC 1243
Query 1157 CTCCTAGCCTTTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTCC 1216
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1244 CTCCTAGCCTCTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTTC 1303
Query 1217 GTGTAGGAAGATACGATCCACCTCCACCTGCAACTGAACCTGATGATTTTGTGTATGATC 1276
||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1304 GTGTAGGAAGATATGATCCACCTCCACCTGCAACTGAACCTGAGGATTATGTGTATGATC 1363
Query 1277 TTCGACCAAGGTGGCCTCTTGGAGAGGAGTATACAAAAGGAAGAAGCAAAGCTCGTTCTA 1336
||||||| |||||||||||||| ||||||||| | |||||||||||| ||||||||||||
Sbjct 1364 TTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTA 1423
Query 1337 TGAGAACTGCGCGGATTCACCCGTCACTTACTTCAATTATCCGTGCAGATTCTCTTCAAC 1396
|||||||||| ||||| || ||||||||||||||||| || | ||||||||||||||||
Sbjct 1424 TGAGAACTGCACGGATCCATCCGTCACTTACTTCAATCATTAGAGCAGATTCTCTTCAAC 1483
Query 1397 AACAAACA 1404
||||||||
Sbjct 1484 AACAAACA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5