BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902576
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45410.1 | Symbols: LBD19 | LOB domain-containing protein 19... 911 0.0
> AT2G45410.1 | Symbols: LBD19 | LOB domain-containing protein
19 | chr2:18712287-18713116 REVERSE LENGTH=746
Length=746
Score = 911 bits (493), Expect = 0.0
Identities = 551/579 (95%), Gaps = 3/579 (1%)
Strand=Plus/Plus
Query 1 ATGATGACCGCAAACTTGAACGGCGGTGGAAGAGGAGGAGGGGAAGGACCATGCGGGGCG 60
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 9 ATGATGACCGGAAACTTGAACGGCGGTGGAAGAGGAGGA---GAAGGACCATGCGGGGCT 65
Query 61 TGCAAGTTCTTGAGGAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCA 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TGCAAGTTCTTGAGAAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCA 125
Query 121 GATCAAGGAACTGCGAGATTTGCAGCGGTTCACAAAGTGTTTGGAGCCAGCAATGCCTCT 180
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 126 GAGCAAGGAACTGCGAGATTTGCAGCAGTTCACAAAGTATTTGGGGCCAGCAATGCCTCT 185
Query 181 AAGATGTTACTGAGATTGCCTTTGCACAAGCGACTTGATGCAGTCGTCACGCTCTGTCAC 240
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 186 AAGATGTTACTGAGATTGCCTCTGCACAAGAGACTTGATGCAGTCGTCACGCTCTGTTAC 245
Query 241 GAGGCCATGGCAAGGCTTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTT 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GAGGCCATGGCAAGGATTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTT 305
Query 301 CAACACCAGGTGATGAATCTACAAGCAGAGCTTGCTCATGTTCAAGCTCTTCTTTCAACA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 306 CAACACCAGGTGATGAATCTACAAGCAGAGCTTGCTCATGTTCAAGCTCGTCTTTCAACA 365
Query 361 TTTCAGCGTTTTCCTCTACAATCGCCACAACAAATGCAGCCACCGCCTTTTGATCTTGCG 420
||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 366 ATTCAGCGGTTTCCTCTACAGTCGCCACAACAAATGCAGCCACCGTCTTTTGATCCTGCG 425
Query 421 CATAACAATGAATATACGATGGAACCGAGTAATTTGGATGGTGTGTGGGAAGAAGAACAT 480
||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 426 CATAACAATGAATATGCGATGGAACCGAGTAACTTGGATAGTGTGTGGGGGGAAGAACAT 485
Query 481 TTACTTCAAGATGGAACTGAAGATGAGGATTTCCATGAACTGGCGTCGCAGTTCGTCTCA 540
||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 486 TTACTTCAAGATGGAACTGGAGATGGGGATTTCCAAGAACTGGCGTCGCAGTTCGTCTCA 545
Query 541 AGGTATTTACCGGCGGTCAAACTTCCGGCTTGCACTTAG 579
|||||||||||||||||||||||||||||||||||||||
Sbjct 546 AGGTATTTACCGGCGGTCAAACTTCCGGCTTGCACTTAG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5