BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902586
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45500.1 | Symbols: | AAA-type ATPase family protein | chr2... 2377 0.0
> AT2G45500.1 | Symbols: | AAA-type ATPase family protein | chr2:18749798-18752851
REVERSE LENGTH=1773
Length=1773
Score = 2377 bits (1287), Expect = 0.0
Identities = 1415/1478 (96%), Gaps = 4/1478 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTTTCTCAGAGGTATAATTGATTCGTTTAGCTCGATTCTCAACGAAGAATCTAAG 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 123 ATGAGTTTCCTCAGAGGTATAATTGATTCGTTTAGCTCTATTCTCAACGAAGAATCTAAG 182
Query 61 CAAGATTCTAGTGTATCATCATCATCAACTTCTTCTG-GTTCCATGAATGGTATCGATGG 119
||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 183 AAAGATCCTAGTGTTTCATCATCATCAACTTCTTCTGAG-TCCATGAATGGTATCGATGG 241
Query 120 AGTTCCGGTTACTAACGAACGAATTGCGTATAAGCTTAAAGGATACTTCGATTTAGCGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGTTCCGGTTACTAACGAACGAATTGCGTATAAGCTTAAAGGATACTTCGATTTAGCGAA 301
Query 180 AGAGGAAATCGCTAAAGGCGTTAGAGCAGAAGAGTGGGGTTTACATGATGATGCTCTTCT 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AGAGGAAATCGCTAAAGGGGTTAGAGCAGAAGAGTGGGGTTTACATGATGATGCTCTTCT 361
Query 240 TCATTATAGGAATGCTCAGAGGATCATGAATGAAGCTAGTTCTACTCCTTCTCCTTCTTA 299
||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 362 TCATTATAGAAATGCTCAAAGGATCATGAATGAAGCTACTTCTACTCCTTCTCCTTCGTA 421
Query 300 TATTAGTTCCAGTGAAAAGGAGAAGGTGAGATCGTACCGAGAGAAGATTTCAAATTGGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TATTAGTTCCAGTGAAAAGGAGAAGGTGAGATCGTACCGAGAGAAGATTTCAAATTGGCA 481
Query 360 AAATCAAGTATCTGAAAGATTGCAAGCTTTGGGTAAGCGTACAGGTGTTAGAGTGTCTGA 419
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 482 AAATCAAGTATCTGAGAGATTGCAAGCTTTGGGTAAGCGTACAGGTGTTGGAATGTCTGA 541
Query 420 GAATAAGAGAACCGTAGCATCTCCTTCTTCAGCTTCAGTTTCCTCTACAGCGTCAAGGTA 479
||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 542 GAATAAGAGGACGGTGGCATATCCTTCTTCAGCTTCAGTTTCCTCTACAGCGTCAAGGTA 601
Query 480 TAGAAAAACTTCATTGCAAAAGACTCCAGTTCCCAGAGGTGGCATTGCAACGGCAAAGAA 539
||| ||||||| || |||||||||||| ||| ||||||||||| |||||||| ||| |||
Sbjct 602 TAGGAAAACTTTATCGCAAAAGACTCCGGTTGCCAGAGGTGGCGTTGCAACGCCAAGGAA 661
Query 540 CCCTAAAGATGCTGCTGCAAGCCCAAAACCTGTGAAAGAATCTGGAAATGTCTATGATGA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CCCTAAAGATGCTGCTGCAAGCCCAAAACCTGTGAAAGAATCTGGAAATGTCTATGATGA 721
Query 600 TAAGTTGGTTGAGATGATAAACACAACAATAGTGGATAAAAGCCCGTCTGTGAAGTGGGA 659
||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||
Sbjct 722 TAAGTTGGTTGAGATGATAAATACAACAATAGTGGATAGAAGCCCATCTGTGAAATGGGA 781
Query 660 TGATGTCGCTGGACTTGATGGAGCTAAACAAGCTTTGTTGGAGATGGTAATTTTACCGGC 719
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGATGTCGCTGGACTTAATGGAGCTAAACAAGCTTTGTTGGAGATGGTAATTTTACCGGC 841
Query 720 AAAACGAAGGGATTTATTCACTGGTCTCCGGAGACCAGCGAGAGGTCTGCTTCTCTTTGG 779
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 842 AAAACGAAGAGATTTGTTCACTGGTCTCCGAAGACCAGCGAGAGGTCTGCTTCTCTTTGG 901
Query 780 ACCACCTGGAAATGGAAAAACAATGCTTGCCAAGGCAGTCGCTTCCGAGTCACAGGCAAC 839
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 902 GCCACCTGGCAATGGGAAAACAATGCTTGCCAAGGCAGTCGCTTCTGAGTCACAGGCAAC 961
Query 840 ATTCTTCAACGTCTCAGCATCTTCTTTGACGTCAAAATGGGTGGGTGAGGCTGAAAAGCT 899
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 962 ATTTTTCAATGTCTCAGCATCTTCTTTGACATCAAAATGGGTGGGTGAGGCTGAAAAGCT 1021
Query 900 AGTTAAAACGCTGTTTCAAGTTGCAATATCCAGACAACCGTCTGTTATATTTATGGATGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AGTTAAAACGCTGTTTCAAGTTGCAATATCCAGACAACCGTCTGTTATATTTATGGATGA 1081
Query 960 AATAGATAGTATAATGTCAACAAGGTCGATCAGTGAGAATGAAGCAAGCAGAAGGTTGAA 1019
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1082 AATAGATAGTATAATGTCAACAAGGTCAACCAGTGAGAATGAAGCAAGCAGAAGGCTGAA 1141
Query 1020 ATCAGAATTCCTTATCCAGTTTGACGGTGTGACTTCTAATCCTGATGATTTGGTGATTGT 1079
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1142 ATCAGAATTTCTTATCCAGTTTGATGGTGTGACTTCTAATCCTGATGATTTGGTGATTAT 1201
Query 1080 CATTGGAGCTACTAACAAGCCACAGGAGTTGGATGATGCAGTGCTCAGGAGATTGGTGAA 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1202 CATTGGAGCTACTAACAAGCCACAGGAGTTGGATGATGCAGTGCTTAGGAGATTGGTGAA 1261
Query 1140 GAGAATATATGTACCATTGCCGGATTCAAACGTCAGAAAACTACTTTTTAAAACTAAATT 1199
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1262 GAGAATATATGTACCATTGCCGGATTCCAACGTCAGAAAACTACTTTTTAAAACTAAATT 1321
Query 1200 AAAGTGCCAGCCTCACTCTTTATCCGATGACGACATTGATAAAATCGTCAAAGAAACCGA 1259
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1322 AAAGTGCCAGCCTCACTCGTTATCCGATGGCGACATTGATAAAATCGTCAAAGAAACCGA 1381
Query 1260 AGGATACTCAGGAAGTGATCTTCAAGCATTGTGTGAAGAAGCTGCAATGATGCCGATCAG 1319
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1382 AGGATACTCAGGAAGCGATCTCCAAGCATTGTGTGAAGAAGCTGCAATGATGCCAATCAG 1441
Query 1320 AGAACTGGGTGCAGATATTCTTACCG-TCCAAGCAAATAAAGTAAGACCTCTACGATATG 1378
|||||| |||||| ||||||| || | |||||||||||||||||||| ||||||||||||
Sbjct 1442 AGAACTCGGTGCAAATATTCTAAC-GATCCAAGCAAATAAAGTAAGATCTCTACGATATG 1500
Query 1379 ATGATTTTCGGAAATCGATGGCAGTGATCAGACCCAGCTTGAGTAAAAGCAAATGGGAAG 1438
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1501 ATGATTTTCGGAAATCAATGGCAGTGATCAGACCAAGCTTGAGTAAAAGCAAATGGGAAG 1560
Query 1439 AGCTTGAACGTTGGAACTCAGAGTTTGGCTCTAATTGA 1476
||||||||||||||||||||||||||||||||||||||
Sbjct 1561 AGCTTGAACGTTGGAACTCAGAGTTTGGCTCTAATTGA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5