BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902591
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45560.1 | Symbols: CYP76C1 | cytochrome P450, family 76, su... 1351 0.0
AT1G33720.1 | Symbols: CYP76C6 | cytochrome P450, family 76, su... 337 1e-91
> AT2G45560.1 | Symbols: CYP76C1 | cytochrome P450, family 76,
subfamily C, polypeptide 1 | chr2:18776052-18778510 REVERSE
LENGTH=2034
Length=2034
Score = 1351 bits (731), Expect = 0.0
Identities = 834/884 (94%), Gaps = 6/884 (1%)
Strand=Plus/Plus
Query 4 TTATCATGTTTTCTTATCTTCACCACCACAAGATCTGGACGAAACTCTCACGGGACCTTC 63
||||||||||||||||||||||||||||||||||||||||||| ||| | |||| || |
Sbjct 205 TTATCATGTTTTCTTATCTTCACCACCACAAGATCTGGACGAATCTCCCGCGGGGCCACC 264
Query 64 GCTCTGCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGGAAAA 123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 GCGCTGCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGGAAAA 324
Query 124 CATCCACATCGCTCATTCGCTGCA-CTCTCGAAAACTTATGGACCAGTCATGAGTCTTAA 182
|||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||
Sbjct 325 CATCCACATCGCTCATTCGCCG-AGCTCTCAAAAACTTATGGACCAGTCATGAGTCTTAA 383
Query 183 GCTTGGAAGTTTAAATACAGTGGTTATAGCTTCACCAGAAGCTGCAAGAGAGGTTTTACG 242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 384 GCTTGGAAGTTTAAATACAGTGGTTATAGCTTCACCAGAAGCTGCGAGAGAGGTTTTACG 443
Query 243 AACACATGAGCAGATTTTGTCTGGCCGTAGTCCCACTAACGCGATACGGTCCATCAATCA 302
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 444 AACACATGACCAGATTTTGTCTGCCCGTAGTCCCACTAACGCGGTACGGTCCATCAATCA 503
Query 303 CCAAGATGCTTCCCTTATCTGGCTTCCTTCGTCGTCTGCTCGTTGGAGGCTGTTTAGAAG 362
|||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 504 CCAAGACGCTTCCCTTGTCTGGCTTCCTTCGTCGTCCGCTCGTTGGAGGCTGTTGAGAAG 563
Query 363 GCTGTCGGTGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGAAAGCATTGAGGGT 422
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 564 GCTGTCGGTGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGAAAGCCTTGAGGAT 623
Query 423 GAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGATAGAGAAGAATCTGT 482
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 624 GAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGATAGGGAAGAATCTGT 683
Query 483 TGATATTTCTCGTGTATCCTTCATCACAACTCTTAATATCATATCGAACGTTCTGTTTTC 542
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 684 TGATATTTCTCGTGTAGCCTTCATCACAACTCTTAATATCATATCGAACATTCTGTTTTC 743
Query 543 CGTCGATCTCGGCAGCTACAACGCGAAAGCTTCTATTAACGGGGTTCAAGACACGGTGAA 602
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 744 CGTCGATCTCGGTAGCTACAACGCGAAAGCTTCTATTAATGGGGTTCAAGACACGGTGAT 803
Query 603 TAGTGTTATGGGTGCTGTCGGGAATCCAGACGCTGCTAATTACTTTCCATTTCTGGGGTT 662
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 804 TAGTGTTATGGATGCTGCCGGGACTCCAGACGCTGCTAATTACTTTCCATTTCTGAGGTT 863
Query 663 TCTTGATCTGCAAGGTAATAG-GAAGACTATGAAGGTTTGCACGGAGAGGCTGATAAGGG 721
||||||||||||||||||| | ||||||| | ||||||||||||||||||||| ||||||
Sbjct 864 TCTTGATCTGCAAGGTAAT-GTGAAGACTTTTAAGGTTTGCACGGAGAGGCTGGTAAGGG 922
Query 722 TTTTCCGTGGGTTCATTGATGCTAAGATTGCAGAAATTTTTTCGCAGAATAACCCTAAAG 781
||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 923 TTTTCCGTGGGTTCATTGATGCTAAGATTGCGGAAAAATCATCGCAGAATAACCCTAAAG 982
Query 782 ATGTTTCAAACAACGATTTCGTAGACAACCTTCTCGATTTCAAAGGAGATGAAACAGAAC 841
|||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 983 ATGTTTCAAAAAACGATTTCGTTGACAACCTTCTCGATTACAAAGGAGATGAATCAGAAC 1042
Query 842 TCAACATTAGCGATATTGAACACCTTCTCTTGG-TAAGTCTTAC 884
|| ||||||||||||||||||||||||||||| || || ||||
Sbjct 1043 TCTCCATTAGCGATATTGAACACCTTCTCTTGGATATGT-TTAC 1085
> AT1G33720.1 | Symbols: CYP76C6 | cytochrome P450, family 76,
subfamily C, polypeptide 6 | chr1:12220897-12224000 REVERSE
LENGTH=1615
Length=1615
Score = 337 bits (182), Expect = 1e-91
Identities = 539/706 (76%), Gaps = 45/706 (6%)
Strand=Plus/Plus
Query 4 TTATCATGTTTTCTTATCTTCACCACCACAAGATCTGGACG-A-AAC-TCTCACGGGACC 60
||||||||| ||||| ||||||||||| || ||||| |||| | | | ||| | ||
Sbjct 68 TTATCATGTCTTCTTTTCTTCACCACCGCACGATCTCGACGTAGCCCTTGTCAATTGTCC 127
Query 61 TTCGCTCTGCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGGA 120
| || ||||| || |||||||||||||| || || ||||| ||||| || ||||||
Sbjct 128 -AAG-TC-ACCTCCGGGGCCTCCACGGTTACCCATAATTGGAAACATTCATCTGGTCGGA 184
Query 121 AA-ACATCCACATCGCTCATTCGCTGCA-CTCTCGAAAACTTATGGACCAGTCATGAGTC 178
|| | | ||||||| ||||||| | | | ||||| ||||| |||||||||||||||||||
Sbjct 185 AAGA-ACCCACATCACTCATTCAC-GGACCTCTCAAAAACATATGGACCAGTCATGAGTC 242
Query 179 TTAAGCTTGGAAGTTTAAA-TACAGTGGTTATAGCTTCACCAGAAGCTGCAAGAGAGGTT 237
||||||||||| ||||||| | ||||||| |||||||||| ||| |||| ||||| ||
Sbjct 243 TTAAGCTTGGATGTTTAAACT-CAGTGGTCATAGCTTCACGAGACGCTGTGAGAGAAGTA 301
Query 238 TTACGAACACATGAGCAGATTTTGTCTGGCCGTAGTCCC-AC-T-AACGCGAT-ACGGTC 293
|| |||||| || || || |||||||| || || | | | || |||| | ||
Sbjct 302 CTAAAAACACACGACCAAATCTTGTCTGGACG--GTACATAAGTGAA-GCGACCAAA-TC 357
Query 294 CATCAATCACCAAGA-TGCTTCCCTTATCTGGCTTCCTTCGTCGTC-TGCTCGTTGGAGG 351
|| |||||| || || | |||| || |||| ||| | | ||||| | |||||| ||
Sbjct 358 CAACAATCATCATGAATT-TTCCGTTGGCTGGATTCATCCATCGTCAT-CTCGTTTTAGA 415
Query 352 CTGTTTAG-AAGGCTGTCGG-TGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGA 409
|||| || || |||||| | |||||||| || ||||| ||| ||||| | || || |
Sbjct 416 ATGTTGAGGAAAT-TGTCGGCT-ACTCAGCTGTTCTCACCGCAGTGTATCCAGGCTACCA 473
Query 410 AAGCAT-TGAGGGTGAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGAT 468
|||| | ||||| |||| |||||| |||||||||| | |||| | ||||||||| | ||
Sbjct 474 AAGC-TCTGAGGATGAAGAAGGTGCAGGAACTTGTCAACTTCCTGAGTGAAAGCTGTGAG 532
Query 469 AGAGAAGAATCTGTTGATATTTCTCGTGTATCCTTCATCACAACTCTTAATATCATATCG 528
||||||||| ||||||||||||||| |||||||||| ||||| |||| ||||||||||||
Sbjct 533 AGAGAAGAAGCTGTTGATATTTCTCATGTATCCTTCGTCACAGCTCTCAATATCATATCG 592
Query 529 AACGTTCTGTTTTCCGTCGATCTCGGCAGCTACAACGCGAAAGCTTCTATTAACGGGGTT 588
|| || |||| || ||| ||||||| |||||| | | ||| ||| | | || ||
Sbjct 593 AATATTTTGTTCTCAGTCAATCTCGGTAGCTACGATTCAAAAAATTCCAGTG-CGT--TT 649
Query 589 CAAGACACGGTGAATAGTGTTATG-GG--TGCTGTCGGGAATCCAGACGCT-GCTAA-TT 643
||||| | ||||| | | |||| || | || |||| ||||||||| || ||||| ||
Sbjct 650 CAAGAGATGGTGA-TCG-GTTACCAGGAAT-CTATCGGAAATCCAGAC-CTTGCTAACTT 705
Query 644 ACTTTCCATTTCTGGGGTTTCTTGATCT-GCAAGGTAATAGGAAGA 688
||| |||||| || | |||||||| || ||||||||| || ||||
Sbjct 706 -CTTCCCATTTATGAGATTTCTTGA-CTTGCAAGGTAACAGTAAGA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5