BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902607
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family... 416 5e-116
AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27 | ... 300 5e-81
> AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family
protein | chr2:18831161-18832211 FORWARD LENGTH=549
Length=549
Score = 416 bits (225), Expect = 5e-116
Identities = 249/261 (95%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 83 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGAGGAAG 142
Query 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120
|||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 143 CACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGTGTCAA 202
Query 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 203 GGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 262
Query 181 TGCCAGACTTTGCTTTGCACACCCACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCTCT 240
|||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 263 TGCCAGACTTTGCTCTGCACACCCACAGGAGGGAAGGCAAAGCTCACTGAAGGATGCTCT 322
Query 241 TTCAGGAAAAAGTGAGACTGA 261
|||||||||||||||||||||
Sbjct 323 TTCAGGAAAAAGTGAGACTGA 343
> AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27
| chr3:22611634-22612904 FORWARD LENGTH=609
Length=609
Score = 300 bits (162), Expect = 5e-81
Identities = 224/254 (88%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 77 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGAGGAAG 136
Query 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120
|||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| |||
Sbjct 137 CACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCTTCTTCATGGATGTGAAGTGCCAA 196
Query 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180
|||||||| ||||| || || || ||||| ||||| ||||| |||||| |||| ||||||
Sbjct 197 GGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGTGTGCGGAAAC 256
Query 181 TGCCAGACT-TTGCTTTGCACACCC-ACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCT 238
|||||||| || || ||| || || || ||||||||||||| |||||| ||||||||||
Sbjct 257 TGCCAGACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAGCTCACCGAAGGATGCT 314
Query 239 CTTTCAGGAAAAAG 252
||||||||| ||||
Sbjct 315 CTTTCAGGAGAAAG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11913456513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5