BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902607 Length=261 Score E Sequences producing significant alignments: (Bits) Value AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family... 416 5e-116 AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27 | ... 300 5e-81 > AT2G45710.1 | Symbols: | Zinc-binding ribosomal protein family protein | chr2:18831161-18832211 FORWARD LENGTH=549 Length=549 Score = 416 bits (225), Expect = 5e-116 Identities = 249/261 (95%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 83 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCTCCTGCTGAGCTCGAGAAGAGGAAG 142 Query 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120 |||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct 143 CACAAGCTCAAGCGTCTTGTTCAATCACCCAATTCGTTTTTCATGGATGTCAAGTGTCAA 202 Query 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 203 GGCTGCTTTAACATTACGACTGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 262 Query 181 TGCCAGACTTTGCTTTGCACACCCACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCTCT 240 |||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||| Sbjct 263 TGCCAGACTTTGCTCTGCACACCCACAGGAGGGAAGGCAAAGCTCACTGAAGGATGCTCT 322 Query 241 TTCAGGAAAAAGTGAGACTGA 261 ||||||||||||||||||||| Sbjct 323 TTCAGGAAAAAGTGAGACTGA 343 > AT3G61110.1 | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611634-22612904 FORWARD LENGTH=609 Length=609 Score = 300 bits (162), Expect = 5e-81 Identities = 224/254 (88%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 1 ATGGTCCTTCAAAACGATATTGATCTGCTTAACCCCCCTGCTGAGCTTGAGAAGAGGAAG 60 ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 77 ATGGTTCTTCAAAACGATATCGATCTGCTTAACCCACCTGCTGAGCTTGAGAAGAGGAAG 136 Query 61 CACAAGCTTAAGCGTCTTGTTCAGTCTCCCAATTCATTTTTCATGGATGTCAAGTGTCAA 120 |||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| ||| Sbjct 137 CACAAGCTCAAGCGTCTTGTCCAGTCTCCCAATTCCTTCTTCATGGATGTGAAGTGCCAA 196 Query 121 GGCTGCTTTAACATTACAACGGTGTTCAGCCACTCTCAGACCGTTGTGATGTGTGGAAAC 180 |||||||| ||||| || || || ||||| ||||| ||||| |||||| |||| |||||| Sbjct 197 GGCTGCTTCAACATCACTACTGTTTTCAGTCACTCGCAGACTGTTGTGGTGTGCGGAAAC 256 Query 181 TGCCAGACT-TTGCTTTGCACACCC-ACCGGAGGAAAGGCAAGGCTCACTGAAGGATGCT 238 |||||||| || || ||| || || || ||||||||||||| |||||| |||||||||| Sbjct 257 TGCCAGACAATT-CTGTGC-CAGCCTACAGGAGGAAAGGCAAAGCTCACCGAAGGATGCT 314 Query 239 CTTTCAGGAAAAAG 252 ||||||||| |||| Sbjct 315 CTTTCAGGAGAAAG 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11913456513 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5