BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902608

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40880.1 | Symbols:  | WD-40 repeat family protein / zfwd3 p...   460    4e-129


> AT5G40880.1 | Symbols:  | WD-40 repeat family protein / zfwd3 
protein (ZFWD3) | chr5:16378895-16381335 FORWARD LENGTH=2135
Length=2135

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 396/466 (85%), Gaps = 14/466 (3%)
 Strand=Plus/Plus

Query  1     ATGGTAGCTACTCTTCAAGGACACAAGAAGGATATAAAGGGGATTGCCCTCCCTCAAGGT  60
             ||||||||| ||||| ||||||||||||| ||||| ||||| || ||||| ||||| |||
Sbjct  1121  ATGGTAGCTGCTCTTGAAGGACACAAGAATGATATTAAGGGAATCGCCCTTCCTCAGGGT  1180

Query  61    TCTGATAAACTCTACTCAGCCAGTGGTGATGGTGCTTTGAGAATATGGGACTGCCATACT  120
             || ||||||||||  |||| ||||||||||||| | |||  ||| ||||||||| || ||
Sbjct  1181  TCAGATAAACTCTTTTCAGTCAGTGGTGATGGTACATTGCTAATTTGGGACTGCAATTCT  1240

Query  121   GGTCAATGTGTGC-ATGAGATCAACCTCCAGGCAGAAGCAGGGTCTCTGATTAGTGAAAG  179
             ||||| ||||| | ||   ||||||||||||||||||||||||||||| ||||||||| |
Sbjct  1241  GGTCAGTGTGTTCGAT-CCATCAACCTCCAGGCAGAAGCAGGGTCTCTAATTAGTGAAGG  1299

Query  180   ACCTTGGGTTTTCCTTGGCTTGCCAAATGCTGTAAAGGCTTTTAATGTTCAGACCTGTAA  239
             ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | | ||||
Sbjct  1300  ACCATGGGTTTTCCTTGGCTTGCCAAACGCTGTAAAGGCTTTTAACGTTCAAAACAGTAA  1359

Query  240   AGATTTGCATCTC-AATGGTTCGGTAGGAGGTCAGGTGAATGCAATTG-CTATTGGAAAC  297
             |||| |||||||  || || | ||| ||   ||||||| ||||||| | ||  || ||||
Sbjct  1360  AGATGTGCATCTTGAAGGGGT-GGTTGG---TCAGGTGCATGCAAT-GACTGCTGCAAAC  1414

Query  298   GGAATGCTTTTTGCTGGGACAAGTTCTGGTAGTATATCAGTCTGGAAAGGTACTGACACC  357
             ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||| | 
Sbjct  1415  GGAATGCTTTTTGCTGGAACAAGTTCTGGTAGTATATTAGTCTGGAAAGCTACAGACTCG  1474

Query  358   GAGTCTGATCCTTTCAAATACCTCACATCTCTCGAGGGACAT-A--GTGATGAAGTCAAG  414
             ||||||||||| ||||||||| | |||||||||||||||||| |  ||| ||||||||  
Sbjct  1475  GAGTCTGATCCATTCAAATACTTGACATCTCTCGAGGGACATCATAGTGGTGAAGTCACT  1534

Query  415   TGTTTCGTTGTTGGAGGTCAGAG-GCTTTACTCTGGTTCTGTGGAT  459
             ||||| |||||||||||| | || ||| |||||||||||||| |||
Sbjct  1535  TGTTTTGTTGTTGGAGGTGA-AGTGCTATACTCTGGTTCTGTCGAT  1579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5