BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902613
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA ... 300 5e-81
> AT4G21710.1 | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA
polymerase family protein | chr4:11535525-11542268 REVERSE
LENGTH=3794
Length=3794
Score = 300 bits (162), Expect = 5e-81
Identities = 223/251 (89%), Gaps = 9/251 (4%)
Strand=Plus/Plus
Query 10 TGCATGATTGCACATGGTGCTGCTCACTTTTTGAAAGGGAGGCTGTTTGATCAGGGTGAT 69
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 3360 TGCATGATTGCACATGGTGCTGCTCACTTTTTGAAAGAGAGGCTGTTTGATCAGAGTGAT 3419
Query 70 GCGTATACGGTACATGTGTGTGAAGTCTGCGGGCTCATCACCATTGCAAATATGAAGAAG 129
||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 3420 GCGTATAGGGTACATGTGTGTGAAGTCTGCGGGCTCATTGCCATTGCAAATCTGAAGAAG 3479
Query 130 AATTCTTTTGAATGCAGAGGTGGCAAGAACAGAATAGATATAAAT-AT-TGTCAGCATTC 187
||||||||||||||||||||| ||||||||| || |||||| | | | | | |||||
Sbjct 3480 AATTCTTTTGAATGCAGAGGTTGCAAGAACAAAACAGATATTGTTCAGGTAT-A-CATTC 3537
Query 188 CATATGCTTGCAAATTGCTCTTTCAAGAGCTTATCTTATGGCAATGGCAATTGCACCACG 247
|||||||||||||||| ||||||||||||||||| | ||||||| ||||||||| |
Sbjct 3538 CATATGCTTGCAAATTACTCTTTCAAGAGCTTATGT-----CAATGGCTATTGCACCAAG 3592
Query 248 GATGCTTACTA 258
|||||| ||||
Sbjct 3593 GATGCTCACTA 3603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11762653266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5