BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902678 Length=183 Score E Sequences producing significant alignments: (Bits) Value AT2G46390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 187 3e-47 > AT2G46390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19042301-19043060 REVERSE LENGTH=348 Length=348 Score = 187 bits (101), Expect = 3e-47 Identities = 128/140 (91%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 17 AAAACGAAAGTTCC---GAAGAAG-ATCA-AAGGAGAAAAGATGATTTACCGAAAGTGGA 71 |||||||||||||| ||||||| | | |||||||||||||||||||||||||||||| Sbjct 2 AAAACGAAAGTTCCGAAGAAGAAGAAGAAGAAGGAGAAAAGATGATTTACCGAAAGTGGA 61 Query 72 GCTTGCTGTCCGGTCCACCGGTTATCCTCGGCGGAGCCGTAATTGCCGCCGTCGCCGTCG 131 | ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 62 GTTTGCTGTCCGGCCCACCGGTTATCCTCGGCGGAGCGGTAATTGCTGCCGTCGCCGTCG 121 Query 132 GAATCGTCTTGCAAAACGTA 151 || ||||||||||||||||| Sbjct 122 GATTCGTCTTGCAAAACGTA 141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8048216160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5