BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902678

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G46390.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   187    3e-47


> AT2G46390.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 4 Blast 
hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:19042301-19043060 REVERSE 
LENGTH=348
Length=348

 Score =  187 bits (101),  Expect = 3e-47
 Identities = 128/140 (91%), Gaps = 5/140 (4%)
 Strand=Plus/Plus

Query  17   AAAACGAAAGTTCC---GAAGAAG-ATCA-AAGGAGAAAAGATGATTTACCGAAAGTGGA  71
            ||||||||||||||   ||||||| |  | ||||||||||||||||||||||||||||||
Sbjct  2    AAAACGAAAGTTCCGAAGAAGAAGAAGAAGAAGGAGAAAAGATGATTTACCGAAAGTGGA  61

Query  72   GCTTGCTGTCCGGTCCACCGGTTATCCTCGGCGGAGCCGTAATTGCCGCCGTCGCCGTCG  131
            | ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  62   GTTTGCTGTCCGGCCCACCGGTTATCCTCGGCGGAGCGGTAATTGCTGCCGTCGCCGTCG  121

Query  132  GAATCGTCTTGCAAAACGTA  151
            || |||||||||||||||||
Sbjct  122  GATTCGTCTTGCAAAACGTA  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5