BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902774
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46840.1 | Symbols: ATDUF4, DUF4 | DOMAIN OF UNKNOWN FUNCTIO... 396 2e-109
> AT2G46840.1 | Symbols: ATDUF4, DUF4 | DOMAIN OF UNKNOWN FUNCTION
724 4 | chr2:19249191-19249909 REVERSE LENGTH=618
Length=618
Score = 396 bits (214), Expect = 2e-109
Identities = 328/381 (86%), Gaps = 15/381 (4%)
Strand=Plus/Plus
Query 17 CCAGTGGCCGTGGTAAGAGGAGAAGAGTAGAACAAGAGCACCGCCCAGATCTCAAC-A-- 73
|||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 86 CCAGTGGCCGCGGTAAGAGGAGAAGAGTAGAACAAGAGCACCACTCAGATCTCAACAACG 145
Query 74 AGACTGCAGCTCCT--A-GAGGATCAGC---TGAGGATAA-TGTTTTACCTTTTACGAAG 126
|||||||||||||| | |||||||||| |||||| || |||||| |||||||| |||
Sbjct 146 AGACTGCAGCTCCTACAGGAGGATCAGCTGGTGAGGA-AATTGTTTTGCCTTTTACCAAG 204
Query 127 ACGTTACCTTCGTGGAAAGAGTATGAGTCTGATGAGGTCTACAAAAGAACACCACAACGT 186
|| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 205 ACTTTAGCTTCGTGGAAAGAGTTTGAGTCTGATGAGGTCTACAAAAGAACACCACAACGT 264
Query 187 CCGCACTTCCCATCATTGGCTTACTCGTGTG-AACTTTTTCGTGAAGGGATTGCAGCCGG 245
|| ||||||||||||||||||||| || | || |||| ||||| || |||||||
Sbjct 265 CCTCACTTCCCATCATTGGCTTACACGCATCCAAGTTTTG-GTGAACCGACTGCAGCCTA 323
Query 246 TCTGACTGGAGCTTTTATCAAATGTGTAAAGACAGTAGATGATATGGGTGAGGACACTCC 305
|||||||| |||||||||| | ||||||||||||||||||| |||| |||||||||||||
Sbjct 324 TCTGACTGCAGCTTTTATCGATTGTGTAAAGACAGTAGATGGTATGTGTGAGGACACTCC 383
Query 306 AAGAAGCAAACTAGATGTCTACAAAGAGACATTTGTCATGCTAGAGGAGCAGGGATTCGA 365
|| ||| ||||||||||||||| |||||||||| ||| | ||||||||||| |||||
Sbjct 384 AAAAAGTGAACTAGATGTCTACAGAGAGACATTTAAAATGTTCGAGGAGCAGGGTTTCGA 443
Query 366 CGTTAG-AGCGCCTCTATCAC 385
|||| | || ||| ||||||
Sbjct 444 CGTT-GCAGAACCTTTATCAC 463
Score = 106 bits (57), Expect = 3e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 604 AAGCTGAACAAGAGTCTGGTGAGGTGCAAAAGCAGCTTTGAAGACAAGGAGACGGCAAAA 663
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 556 AAGCTGAAAAAGAGTCTGGTGAGGTGCAAAAGCAGCTTTGAAGACAAGGAGACGGCCAAA 615
Query 664 TAA 666
|||
Sbjct 616 TAA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5