BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902778
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47230.2 | Symbols: DUF6 | DOMAIN OF UNKNOWN FUNCTION 724 6 ... 1851 0.0
> AT2G47230.2 | Symbols: DUF6 | DOMAIN OF UNKNOWN FUNCTION 724
6 | chr2:19387020-19390234 FORWARD LENGTH=2459
Length=2459
Score = 1851 bits (1002), Expect = 0.0
Identities = 1325/1471 (90%), Gaps = 61/1471 (4%)
Strand=Plus/Plus
Query 1 ATGGAGGAGAA-GATTAAGAAAGATTCTGAAGTAGAAGTGTCTTCGAAAGAAGAAGGTTT 59
|||||||| || ||||| ||||| ||||||||| ||||||||||| | ||||||||||||
Sbjct 107 ATGGAGGA-AACGATTAGGAAAGGTTCTGAAGTGGAAGTGTCTTCTACAGAAGAAGGTTT 165
Query 60 TGCAGATGCATGGTTCAGAGGGATTCTCGAAGAAAATCCAACCAAATCAGGCCGCAAAAA 119
||||||||||||||||||||| || ||| |||||||||| ||||||||||| ||||||||
Sbjct 166 TGCAGATGCATGGTTCAGAGGTATCCTCCAAGAAAATCCTACCAAATCAGGTCGCAAAAA 225
Query 120 GCTCCGTGTTCGTTACTTGACTCTGTTAAACGACGACGGC-TTGTCTCCTCTTGTCGAGA 178
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 226 GCTCCGTGTTCGTTACTTGACTCTGTTAAACGACGAC-GCTTTGTCTCCTCTTATCGAGA 284
Query 179 ACATAAAACCCAAGTTTATCCGACCGGTTCCGCCGGAGAATGAGTACAAAGGTATCGTCT 238
|||| |||| | |||||| ||||||||||||||||||||||| ||||| |||||||| |
Sbjct 285 ACATTGAACCGAGGTTTATTCGACCGGTTCCGCCGGAGAATGAATACAACGGTATCGTTT 344
Query 239 TGGAGGAAGGATCGGTGGTTGATGCTGACCACAAAGACGGATGGTGGACTGGTGTGATTA 298
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 345 TGGAGGAAGGAACGGTGGTTGATGCTGACCACAAAGACGGATGGTGGACCGGTGTCATTA 404
Query 299 TTAAGAAATTGGAGAATGGCAAGTTTTGGGTTTACTATGATTCTCCAACTGACATTATTG 358
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 405 TTAAGAAATTGGAGAATGGCAAGTTTTGGGTTTATTATGATTCTCCACCTGACATTATTG 464
Query 359 AGTTCAAGCGAAACCATTTGAGAGCTCATTTGCGCTGGACCGGTTGGAAATGGGTCCGAC 418
||||| || ||||||| |||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 465 AGTTCGAGAGAAACCAATTGAGACCTCATTTGCGCTGGTCCGGTTGGAAATGGCTCCGAC 524
Query 419 CAGATATTCAGGAATTGGATAAGTCCATGTTTTGCCCCGGGACAATGGCGGAAGTGGGTA 478
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 525 CAGATATTCAGGAATTGGATAAGTCCATGTTTAGCTCCGGGACAATGGCGGAAGTGAGTA 584
Query 479 CTGTCATAGAGAAAGCGGAAGTTGCGTGGTTCCCTGCTATGATAATTAAAGAGATTGAAG 538
|| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CTATTGTAGATAAAGCTGAAGTTGCGTGGTTCCCTGCTATGATAATTAAAGAGATTGAAG 644
Query 539 TGGATGGTGAGAAGAAATTCATCGTGAAGGACTGTAATAAACACTTGAGCTTTAATGGTG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 645 TGGATGGTGAGAAGAAATTCATCGTGAAGGACTGTAATAAACACTTGAGCTTTAGTGGTG 704
Query 599 ATGAGGCAAGAACAAACTCTACCATTGATTCGTGTCGTGTTAGACCCACGCCGCCTCCTT 658
||||||| ||||| ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 705 ATGAGGCGAGAACCAACAGTACCATTGATTCGTCCCGTGTTAGACCCACACCGCCTCCTT 764
Query 659 TTCCAGTTGAAAAGTACGAATTGTTGGATCGTGTGGAGGTGTTTCGTGGTTCGGTATGGC 718
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 765 TTCCAGTTGAAAAGTACGAATTGATGGATCGTGTGGAGGTGTTTCGTGGTTCGGTATGGC 824
Query 719 GTCAAGGGTTGGTAAGGGGAGTTCTTGATCAGAACTGTTACATGGTTAGTTTAGTGATTA 778
||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||| |||
Sbjct 825 GTCAAGGTTTGGTAAGAGGAGTTCTCGATCACAACTGTTACATGGTTTGTTTAGTGGTTA 884
Query 779 CAAAGGAGGAATCAGTGTTTAAACACTCGGATCTTAGGCCTTGTAAGGTGTGGGAAGATG 838
||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct 885 CAAAGGAGGAACCAGTGGTTAAACACTCAGATCTTAGGCCTTGTAAAGTGTGGGAAGATG 944
Query 839 GAGTTTGGCATGACGGACCAAAGCAAACTCCTGTGACAGAAACTCCTTCCAACGTCATAA 898
| | || | ||| | || |||| ||||||||||||||||||||| |
Sbjct 945 G-G-----CA--A---ACC----C---CT---GTGATAGAAACTCCTTCCAACGTCATGA 983
Query 899 AAACTAAGCCAATGCGCTCTTGCTCTGGTTCTTGTTCTGGTGCTAAGGT-AATGACTCCT 957
|||| ||||||||||||||||| | | || | | ||||||| | ||||||||||
Sbjct 984 AAACGAAGCCAATGCGCTCTTG-T-T----CT-G----G-TGCTAAG-TCAATGACTCCT 1030
Query 958 AAAAGGACCACAAAATATGCCAGAAGGTCACTGAATCTTGAGGAAAA-TGCTGAGACACT 1016
||||||||||||||| |||||||||| ||||||||||||||| |||| ||| ||||||||
Sbjct 1031 AAAAGGACCACAAAACATGCCAGAAGATCACTGAATCTTGAG-AAAAGTGCAGAGACACT 1089
Query 1017 CACAAAAGCTGAAACTGGAGCTGCCACTCGAGAATTGAGAAGTAAGAGGGCTAATGAT-- 1074
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1090 CACAAAAGCTGAAAGTAGAGCTGCCACTGGAGAATTGAGAAGTAAGAGGGCTAATGATGT 1149
Query 1075 -A--A-T-A-----CTCCTCTGGTCATAGCACCGCAAGAGAAACCAATAGCCTCTGTTAA 1124
| | | | |||||||||||||| | || |||| ||||||||||||||||||| |
Sbjct 1150 TATTAATGATAATACTCCTCTGGTCATAACCCCACAAGTGAAACCAATAGCCTCTGTTGA 1209
Query 1125 ACCTGTAACCCCTTCCCGGGTCAGAACTGCAACACCGTTGAAACAAACAGAGGCTGATAC 1184
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1210 ACCTGTAACCCCTTCCCGAGTCAGAACTGCAACACCGTTGAAACAAACAAAGGCTGATAC 1269
Query 1185 TCAAGGAAAGACATCCCCCAAGAAGACACTTGAGCCAATGAGAAATGAAAATGGCTTAGA 1244
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1270 TCAAGGAAAGTCTTCCCCCAAGAAGACACTTGAGCCAATGAGAGATGAAAATGGCTTAGA 1329
Query 1245 AAACTCAACTCAACagaagatacttgaggagaagaatagc-aaagagaagggtagaaaaa 1303
||| ||||||| ||||||| |||||||||||||||||||| ||| |||||||||| ||||
Sbjct 1330 AAATTCAACTCGACAGAAGGTACTTGAGGAGAAGAATAGCGAAA-AGAAGGGTAGGAAAA 1388
Query 1304 gaaaaagagaaaaagaaCACAACTCAGACCTTAAGGAGACTGATGAGAGTTGCAATGGTC 1363
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GAAAAAGACAAGAAGAACACAACTCAGACCTTAAGGAGACTGATGAGAGTTGCAATGGTC 1448
Query 1364 AAATAGCCGAGATCAATGATACAAGCAGTATCTGCAACGATGTTGATGTCGATGATCAGC 1423
|||| ||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1449 AAATGGCCGAGATCAATGATACAAGCAGTATCTGCAACGATGTTGATG---AT---CAGC 1502
Query 1424 ATCTCGCTGCTTGGATAAATTTACCTACTGA 1454
||||||||||||||||||||| ||||||||
Sbjct 1503 CTCTCGCTGCTTGGATAAATTTGCCTACTGA 1533
Score = 937 bits (507), Expect = 0.0
Identities = 610/661 (92%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1453 GAGCCATCCTTTTATCATAGCCCGATTGTGGTGAATGATGCTGCTGTTGCCACCGATGTT 1512
||| ||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1577 GAGACATCCATTGATCATAGCCCGATTGTGGTGAATAATGCTGCTATTGCCACCGATGTT 1636
Query 1513 GAGGAAACACAAGGGAAGGATACACTAATGATTTTGCCTTTTGCAAAAAAGTCACCGTTT 1572
||||||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1637 GAGGAAAGACAAGCAAATGATACACTAATGATTTTACCTTTTGCAAAGAAGTCACCGTTT 1696
Query 1573 TGGAAGATGCATGAGACACAAGAGGTATGCAAAATAGTACCACAGAGTCCACATTTCAGT 1632
||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1697 TGGAAGATGTATGAGACACAGGAGGTATGCAAAATAGCACCACAGAGTCCACATTTCAGC 1756
Query 1633 CCGTTGTTCGACGCGAAAGAAGAACTCCGCGAATGGACAGCGGTTGGTATGATGGTGACT 1692
||| ||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1757 CCGCTGTTCGAGGCTAAAGAAGAACTCCGCGAATGGACAGCCGTTGGTATGATGGTGAGT 1816
Query 1693 TTCTATGGGTTATTAGAGGAAGTCAAAAATCTGCAGCTCGATGATTCCCCAAGCAAACTA 1752
|||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||
Sbjct 1817 TTCTATGGTTTATTAGAGGAAGTAAAAAACCTGCAACTCGATGTTTCCCCAAGCACTCTA 1876
Query 1753 AGTAGCCTCAGTTGTTCTTTTGCGGACCTAGAGAAGCATGGTTTCGACGTTGCAGCCCCT 1812
|||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1877 GGTAGCCTCAGTTGTTCTTTTGCCGAGCTAGAGAAGCACGGTTTTGACGTTGCAGCCCCT 1936
Query 1813 CAGTCACGGATCAACAAAATATTGTCTCTCCAAGATGAGCTAGCAAAGAAAGCAGAGGAA 1872
|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1937 CAGTCACGAATCAACAAAATGCTGTCTCTCCAAGATGAGCGAGCAAAGAAAGCAGAGGAA 1996
Query 1873 AGAAAATGTCTAGAGAAGAAGATAGAAGCTGGAGAGATGGAAGGGCACAAGTATGAAGAA 1932
|||||| |||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||
Sbjct 1997 AGAAAAGGTCTTGAGAAGAAGATTGAAGCAGGAGAGATAGAAGGGCACACGTATGAAGAA 2056
Query 1933 GAAATGGCCGAGTTAGAA-TGCAAAATTCTGGAGCTGAAGAGACAACAAGCGGTTACGAA 1991
|||||||| ||||||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 2057 GAAATGGCTGAGTTAGAACT-CAAAATTCTGGAGCTGAAGAGACAACAAGTGGTTGCGAA 2115
Query 1992 AGAGATGAAGGAAACTACAGACAAAATGACAAGTGGAATGAAATCATATGCAGAAATGAT 2051
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2116 AGAGATGAAGGAAGCTACAGACAAAGTGACAAGTGGAATGAAATCATATGCAGAAATGAT 2175
Query 2052 TAATCAAGAGATGGAAGATTTGAGGCTTGAGTTTCAGACAACTGCTTCTGCTCCATGGTA 2111
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2176 TAATCAAGAGATAGAAGATTTGAGGCTTGAGTTTCAGTCAACTGCTTCTGCTCCATGGTA 2235
Query 2112 A 2112
|
Sbjct 2236 A 2236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5