BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902782
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47260.1 | Symbols: WRKY23, ATWRKY23 | WRKY DNA-binding prot... 1380 0.0
> AT2G47260.1 | Symbols: WRKY23, ATWRKY23 | WRKY DNA-binding protein
23 | chr2:19404820-19407084 REVERSE LENGTH=1877
Length=1877
Score = 1380 bits (747), Expect = 0.0
Identities = 942/1031 (91%), Gaps = 34/1031 (3%)
Strand=Plus/Plus
Query 1 ATGGAGTTTACAGATTTCTCAAAGACGAGTTTTTATTACCCGTCGTCGCAAAGCGTTTGG 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 639 ATGGAGTTTACAGATTTCTCAAAGACGAGTTTTTACTACCCGTCGTCACAAAGCGTTTGG 698
Query 61 GATCTCGGAGATTTAGCGGCGGCTGAGAGGAATTCTTTAGGGTTTATGGAGTTATTGGGT 120
||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||
Sbjct 699 GATTTCGGAGATTTAGCGGCGGCGGAGAGGCATTCTTTAGGGTTCATGGAGTTATTAAGT 758
Query 121 TCT---CAGCATCATGACTTTGCTACTGTGTCTCCTCATTCCTCCCTTCTCGAAACGCCT 177
||| |||||||| |||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct 759 TCTCAGCAGCATCAAGACTTTGCTACTGTTTCTCCTCATTCCTTCCTTCTCCAAACGTCT 818
Query 178 CAA---C--A-GCAAAGGCAACCATCGGCGAAGCTGTCTTCAAGTATCCTTCAAGCTCCA 231
||| | | ||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 819 CAACCGCAAACGCAAACGCAACCATCGGCGAAGCTGTCTTCAAGTATCATTCAAGCTCCA 878
Query 232 CCGTCAGAGCAATTAGTGACGTCAAAGGTGGAGCCTTTGTGTTCGGATCATTTGTTGGCA 291
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 879 CCGTCAGAGCAATTAGTGACGTCAAAGGTGGAGTCTTTGTGTTCGGATCATTTGTTGATA 938
Query 292 AACCCACCGGCGACTCCTAACTCGTCATCGATTTCGTCTGCTTCAAGCGAGGCTCTAAAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AACCCACCGGCGACTCCTAACTCGTCATCGATTTCGTCTGCTTCAAGCGAGGCTCTAAAT 998
Query 352 GAAGAGAAACCG-AAACGAGAAGGCAACGAAGAAG-A-GA--AG-AG-TCATACTAAGAA 404
|||||||||||| |||| ||||| ||| ||||||| | || | || ||| || ||||
Sbjct 999 GAAGAGAAACCGAAAAC-AGAAGACAATGAAGAAGAAGGAGGTGAAGATCA-AC-AAGAG 1055
Query 405 ACAAATGTTTTGGCGTAAG-AACAGGTTAAAACCAAAGAAGAATAATCAGAAGAGACAGA 463
| | | || | | |||| |||| ||| ||| |||||||||||||||||||||||||||
Sbjct 1056 A-AGA-GTCAT-AC-TAAGAAACA-GTTGAAAGCAAAGAAGAATAATCAGAAGAGACAGA 1110
Query 464 GAGAGGCAAGAGTCGCATTCATGACAAAGAGTGAGGTTGATCATCTCGAAGATGGTTATC 523
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1111 GAGAGGCAAGAGTCGCATTCATGACAAAGAGTGAAGTTGATCATCTCGAAGATGGTTATC 1170
Query 524 GTTGGAGAAAATATGGTCAAAAAGCTGTCAAAAACAGTCCTTTTCCCAGGAGTTACTACC 583
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GCTGGCGAAAATATGGTCAAAAAGCTGTCAAAAACAGTCCTTTTCCCAGGAGTTACTACC 1230
Query 584 GTTGCACAACGGCTTCATGTAACGTGAAGAAGAGAGTGGAGAGATCATTCAGAGATCCAA 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GTTGCACAACGGCTTCATGTAACGTGAAGAAGAGAGTGGAGAGATCATTCAGAGATCCAA 1290
Query 644 GCACGGTGGTTACAACCTACGAAGGTCAGCACACACACATTAGTCCTCTCACGTCTCGTC 703
|||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 1291 GCACTGTGGTTACAACCTACGAAGGTCAACACACTCACATTAGTCCACTCACGTCTCGTC 1350
Query 704 CTATTTCAACTGGAGGCTTCTTCGGATCATCAGGAGCTGCTTCGAATCTCGGTAATGGCT 763
||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 1351 CTATTTCCACTGGAGGTTTCTTCGGATCGTCAGGAGCTGCTTCGAGTCTCGGTAATGGTT 1410
Query 764 GCTTTGGGTTTCCTATTGATGGCTCTACGTTAATCTCTCCTCAGTTCCAACAGCTTGTTC 823
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1411 GCTTTGGGTTTCCTATTGATGGCTCCACGTTAATCTCTCCTCAGTTCCAACAGCTTGTCC 1470
Query 824 ATTACCACcaacaacaacaacaacaacaacaacaaGAGCTCATGTCTTGTTTTGGAGGAG 883
| ||||| || | ||||| || |||||| ||| |||||||||||||||||||||
Sbjct 1471 AATACCATCA-C--CAACAGCAGCAACAAGAAC------TCATGTCTTGTTTTGGAGGAG 1521
Query 884 TCGGTGAGTACCTTAATAGCCACGCAAATGAGTATGATGATGATCATCGTGTGAAGAAGA 943
|| |||||||||||||||||||| |||||||||| ||||||| |||||||||||||||
Sbjct 1522 TCAACGAGTACCTTAATAGCCACGCTAATGAGTATGGTGATGATAATCGTGTGAAGAAGA 1581
Query 944 GTCAAGTTTTGGTTAAAGATAATGGACTTCTTCAAGATGTTGTTCCGTCTCATATGTTGA 1003
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1582 GTCGAGTTTTGGTTAAAGATAATGGACTTCTGCAAGATGTTGTTCCGTCTCATATGTTGA 1641
Query 1004 AGGAAGAGTAG 1014
|||||||||||
Sbjct 1642 AGGAAGAGTAG 1652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5