BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902826
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47730.1 | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathi... 407 1e-112
AT2G47720.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 147 3e-34
> AT2G47730.1 | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathione
S-transferase phi 8 | chr2:19556326-19559463 FORWARD LENGTH=1734
Length=1734
Score = 407 bits (220), Expect = 1e-112
Identities = 262/281 (93%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 964 AAAGG-ACCTGATGCAACTCACGCTGCTTCATCACCGTCATCATCTCTATCATTACTCAG 1022
||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 364 AAAGGCACCTGATGCAATTCATGCTGCTTTATCACCGTCATCATCTCTATCATTACTCAG 423
Query 1023 AGGAGTGTTACCAAAGTATTTCAGCTCGGAGTGGTCAGTGGCTCAATTCCGGTTGGTTGA 1082
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct 424 AGGAGTGTTACCAAAGTATTTCAGCTCAGAGTTGTCAGTGGCTCAGTTCCGGTTGGTCGA 483
Query 1083 AGGATCTCAATACATAGTGGCATTTGGACATGAGAAGAACACAGTGGTGATTCTTGGGAT 1142
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 484 AGGATCTTAATACATAGTGGCATTTGGACATGAGAAGAACACAG-----ATTCTTGGGAT 538
Query 1143 GGATGGGAGCTTCTACAAATGCCAGTTT-GATCCAGTGCACGGAGGAGAGATGTCTCAGC 1201
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 539 GGATGGGAGCTTCTACAAAGGCCAGTTTTGATCCAGTACACGGAGGAGAGATGTCTCAGC 598
Query 1202 TCGAGTATCACAACTGTCTGAAGCCGCCTTCTGTGTTCTGA 1242
|||||||||| |||||||||||||||||||||||||| |||
Sbjct 599 TCGAGTATCATAACTGTCTGAAGCCGCCTTCTGTGTTTTGA 639
> AT2G47720.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING:
4 anthesis, F mature embryo stage, petal differentiation
and expansion stage, E expanded cotyledon stage, D bilateral
stage; BEST Arabidopsis thaliana protein match is: Transducin/WD40
repeat-like superfamily protein (TAIR:AT3G62770.1);
Has 21 Blast hits to 21 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19556624-19557139
FORWARD LENGTH=219
Length=219
Score = 147 bits (79), Expect = 3e-34
Identities = 90/95 (95%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 1149 GAGCTTCTACAAATGCCAG-TTTGATCCAGTGCACGGAGGAGAGATGTCTCAGCTCGAGT 1207
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 125 GAGCTTCTACAAAGGCCAGTTTTGATCCAGTACACGGAGGAGAGATGTCTCAGCTCGAGT 184
Query 1208 ATCACAACTGTCTGAAGCCGCCTTCTGTGTTCTGA 1242
|||| |||||||||||||||||||||||||| |||
Sbjct 185 ATCATAACTGTCTGAAGCCGCCTTCTGTGTTTTGA 219
Score = 91.6 bits (49), Expect = 2e-17
Identities = 58/62 (94%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 964 AAAGG-ACCTGATGCAACTCACGCTGCTTCATCACCGTCATCATCTCTATCATTACTCAG 1022
||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 66 AAAGGCACCTGATGCAATTCATGCTGCTTTATCACCGTCATCATCTCTATCATTACTCAG 125
Query 1023 AG 1024
||
Sbjct 126 AG 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5