BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902855
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48000.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 667 0.0
> AT2G48000.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:19639007-19640803 REVERSE LENGTH=1709
Length=1709
Score = 667 bits (361), Expect = 0.0
Identities = 530/607 (87%), Gaps = 29/607 (5%)
Strand=Plus/Plus
Query 1 ATGATAAAAGCGCATCTGGAGAATCTCACTGATTTCCCAAATTTCTCTGATCTGCTCTGC 60
|||| | |||||||| ||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1 ATGA-AGAAGCGCATGTGGAGAATCTCACTGATTTCCCAGA--TATCTGATCTGCTCTGC 57
Query 61 CTTTCTCGTGGGTCTTCTTCAACCTTGAAGACTCTGACCCCCTTCTGCTTTACCCTCTTC 120
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 58 CTTTCCCGTGGCTCTTCTTCAACCTTGAAGACTCTGACCCCATTCTGCTTTACCCTCTCC 117
Query 121 AGGTCT-CCTATACACC-CTCC--CTTC-A-AAT-CCGCTTCGGCTTTGAAAACCCAATT 173
|||||| ||| | |||| ||| | | || ||||||| ||||||| ||||||
Sbjct 118 AGGTCTCCCT-TCCACCAATCCGGGGGCGATGATGATGCTTCGGGATTGAAAAACCAATT 176
Query 174 GTTGCGCTTCTGTAATGATTCCGATAAAGTTGCCTCTGTTTTGGAGAGTCACGACGAAAT 233
|||||||||| |||||||||||| |||||||||||| ||||||||||| | || ||||
Sbjct 177 GTTGCGCTTCCGTAATGATTCCGGTAAAGTTGCCTCCGTTTTGGAGAG-GA--ACAAAAT 233
Query 234 CCAAGGAGCTGCTTTTGTTGAGCTCCTTAGGCAGTTACGTCCTTGGCCCGTTTTGTCCCA 293
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CCAAGGAGCTGCGTTTGTTGAGCTCCTTAGGCAGTTACGTCCATGGCCCGTTTTGTCCCA 293
Query 294 AGTGGTCTTCGACTGGAGAAGAAACAAGGCACTATGCGAT-GG-TG----TG-C--C-CA 343
| |||| ||||||||||||||||||||||||||||||||| || || || | | |
Sbjct 294 ACTGGTGTTCGACTGGAGAAGAAACAAGGCACTATGCGATGGGTTGCCTATGACTGCTGA 353
Query 344 TGACT--GCTAAGGGCATTACAATTTCTGGTAGACTGAAGAATGTCGATTTGGCGCTTTC 401
||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 354 TGAATACGCTAAGGGCATTACCATTTCTGGTAGACTGAAGAATGTCGATTTGGCCCTTTC 413
Query 402 CTTGTTTAACGAGTCCCCAAAGAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 461
||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTTGTTTCACGAGTCTGCAAACAAGACCACCTCCGTCTACAATGCTTTGATGGGTGCTTA 473
Query 462 CATGTGCAACGGTTTGGCAGATGATTGCAAGCAGCTCTTCCTTGACTTCAATGCTCAACA 521
| | |||||||||||| | || ||||| ||||||||||||||||||||||| |||||||
Sbjct 474 CCTCTGCAACGGTTTGTCTCATCATTGCGAGCAGCTCTTCCTTGACTTCAATTCTCAACA 533
Query 522 ACAAGGGCACT-C-C-TCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 578
| | || | || | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGACGGACCCTCCTCTTCTACTCCATCTGTCTCTACTTACAACATCCTCATTTCTCTTTA 593
Query 579 TGGCCGT 585
|||||||
Sbjct 594 TGGCCGT 600
Score = 566 bits (306), Expect = 2e-160
Identities = 334/348 (96%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 591 AGACCAGGCTATTTCAAAAGGACTCCAGATAGAGACAGATGGTACTATGAGATCAATTGT 650
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1056 AGACCAGGCTATTACAAAAGGACTCCAGATAGAGACAGATGGTATTATGAGATCAATAGT 1115
Query 651 GGCTAGTTACTTCAGGTGCAATGCGGCTGATAAGCTTGCCAAATTCATGCAGCGTGCAAA 710
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1116 GGCTAGTTACTTCAGGTGCAATGCGGTTGATAAGCTTGCCAAATTCGTGCAGCGTGCAAA 1175
Query 711 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 CTCTGCTGGATGGAAAATGAGCAGGTCTATGTTCCATGGCTTAATGATCATGTATGGATC 1235
Query 771 TCAAAAGCGTTTTAAAGAGATGGAAGACGTCCTCTCTGAAATGGAAAGCTTTAACATAAG 830
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1236 TCAAAAGCGTTTTAAAGAGATGGAAAACGTCCTCTCTGAAATGGAAAGCTTTAAAATAAG 1295
Query 831 CCGGTCCAAGAAGACTCTTTGCATTCTGCATAGAGTATACGCAGCAGCGCATGGACAGGA 890
||||||||||||||| ||||| ||||||| |||||||||||||||| |||||||||||||
Sbjct 1296 CCGGTCCAAGAAGACGCTTTGTATTCTGCTTAGAGTATACGCAGCAACGCATGGACAGGA 1355
Query 891 ACATAAGGTCAATCAAGTCGCAGGAATGATGTTAAAGAATGGACATGA 938
|||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1356 GCATAAGGTTAATCAAGTCGCAGGAATGATGTTAAAGCATGGACATGA 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47571737209
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5