BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902862
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48070.3 | Symbols: RPH1 | resistance to phytophthora 1 | ch... 726 0.0
> AT2G48070.3 | Symbols: RPH1 | resistance to phytophthora 1 |
chr2:19662817-19663902 FORWARD LENGTH=781
Length=781
Score = 726 bits (393), Expect = 0.0
Identities = 525/583 (90%), Gaps = 32/583 (5%)
Strand=Plus/Plus
Query 1 ATGAGTTGGCCTCTCTGCAGCACCCATTCCCATGGGGTCTCCTCTTCCATAGCTCTCACT 60
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 47 ATGAGTTGGTCTCTCTGCAG----CA--CCCATGGGGTCTCCTCTTCCATAGCTCTCACT 100
Query 61 TATGGGTTTCGCCAT---AGAAGATCTACTTTCCGGATTTGCGCCA-CT-T--C----T- 108
||||| ||||||||| |||||||| || ||||| |||| ||||| || | | |
Sbjct 101 TATGGCTTTCGCCATAGAAGAAGATCCACCTTCCGTATTTTCGCCACCTCTGACGGATTA 160
Query 109 GACCCCAAAGACGA---ACCGGAATCTCCTCTCCCTTCCTCATCCTCTTCCCCCTCTGCT 165
|| ||||| ||||| |||||||||||||||||||||||| | ||||||||
Sbjct 161 GAACCCAAGGACGACCCGCCGGAATCTCCTCTCCCTTCCTCA------T---CCTCTGCT 211
Query 166 CTCGGTAAAGACTTGAAAAAGGTAGTTAACAAGACTGCAGCAACCTTTGCCCCTAGAGCT 225
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 212 CTCGGTAAAGACTTGAAAAAGGTTGTTAACAAGACTGCTGCAACCTTTGCCCCTAGAGCT 271
Query 226 TCCACCGCCAGTAAAAACCCTGCTCTCCCTGGAACTACTCTTTACAAAGTTTTTGAGGTT 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TCCACCGCCAGTAAAAACCCTGCTCTCCCTGGAACTACTCTTTACAAAGTTTTTGAGGTT 331
Query 286 CAAGGCTATGCCTCAATGTTGCTCGGAGGTGTCCTTTCTTTCAACCTCCTCTTTCCCTCC 345
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 332 CAAGGCTATGCATCGATGTTCCTCGGAGGTGTCCTTTCTTTCAACCTCCTCTTTCCCTCC 391
Query 346 AATGAACCTGATTTATGGAGGTTGATGGGGATGTGGTCCATTTGGATGTTCACTATTCCT 405
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 392 AGCGAACCTGATTTATGGAGGTTGATGGGCATGTGGTCCATTTGGATGTTCACTATTCCT 451
Query 406 TCTCTTCGGGCACGAGACTGTCCAC-TCAAAGAGAAAGAGGCTCTTAACTACCTATTTCT 464
|||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 452 TCTCTTCGGGCACGAGACTGTCCAAGT-AAAGAGAAAGAGGCTCTTAACTACCTCTTTCT 510
Query 465 GATCATCCCGTTGCTCAATGTTGCTATTCCCTTCTTTTGGAAGTCATTTGCTCTTGTCTG 524
||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 511 CATCGTCCCCTTGCTCAATGTTGCTATTCCCTTCTTTTGGAAATCATTTGCTCTTGTCTG 570
Query 525 GTCTGCTGACACTGTTACCTTCTTTGCAATGTATGCCTGGAAG 567
|||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 571 GTCTGCTGACACGGTTGCCTTCTTTGCTATGTATGCCTGGAAG 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5