BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902873
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:2272... 187 4e-47
> AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720692-22723152
REVERSE LENGTH=1354
Length=1354
Score = 187 bits (101), Expect = 4e-47
Identities = 192/233 (82%), Gaps = 17/233 (7%)
Strand=Plus/Plus
Query 16 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGAAGTAGTAAAGCCTGGATCA 75
||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||
Sbjct 176 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGATGTTGAAAAACCTGGATCA 235
Query 76 CAGC-ATCACAAGGAGGAAACATGTGAAGCTGTTACTATGATTGAGACACCTCCGATGGT 134
| | | |||||| ||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 236 AAACTA-CACAAGAAGGAAACATGTGAAGCTGTGACGATCATTGAGACACCTCCAATGGT 294
Query 135 GGTTGTTGG-GTAC--G-T---G-AA-GATACC-CGACGGCCTGAG-TACTCGAAGTACT 183
||||||||| || | | | || || ||| || || ||| | | ||| | | |||
Sbjct 295 GGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGT-GGTCTGCGGT-CTCTATGCACT 352
Query 184 GTGTGGGCTCAGCATTTGAGTGAAGAAGT-ACGGAGGAGGTTCTACAAGAACT 235
||||||||||||||| |||| |||||| | | | |||||||||||||||||||
Sbjct 353 GTGTGGGCTCAGCATCTGAGCGAAGAATTGA-GAAGGAGGTTCTACAAGAACT 404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5