BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg902873 Length=237 Score E Sequences producing significant alignments: (Bits) Value AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:2272... 187 4e-47 > AT1G61580.1 | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720692-22723152 REVERSE LENGTH=1354 Length=1354 Score = 187 bits (101), Expect = 4e-47 Identities = 192/233 (82%), Gaps = 17/233 (7%) Strand=Plus/Plus Query 16 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGAAGTAGTAAAGCCTGGATCA 75 ||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||| Sbjct 176 TTCTTGGGATACAAAGCTGGGATGACTCACATTGTGAGAGATGTTGAAAAACCTGGATCA 235 Query 76 CAGC-ATCACAAGGAGGAAACATGTGAAGCTGTTACTATGATTGAGACACCTCCGATGGT 134 | | | |||||| ||||||||||||||||||| || || |||||||||||||| ||||| Sbjct 236 AAACTA-CACAAGAAGGAAACATGTGAAGCTGTGACGATCATTGAGACACCTCCAATGGT 294 Query 135 GGTTGTTGG-GTAC--G-T---G-AA-GATACC-CGACGGCCTGAG-TACTCGAAGTACT 183 ||||||||| || | | | || || ||| || || ||| | | ||| | | ||| Sbjct 295 GGTTGTTGGTGTGGTTGGTTATGTAAAGACACCTCGT-GGTCTGCGGT-CTCTATGCACT 352 Query 184 GTGTGGGCTCAGCATTTGAGTGAAGAAGT-ACGGAGGAGGTTCTACAAGAACT 235 ||||||||||||||| |||| |||||| | | | ||||||||||||||||||| Sbjct 353 GTGTGGGCTCAGCATCTGAGCGAAGAATTGA-GAAGGAGGTTCTACAAGAACT 404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10707030537 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5