BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg902874
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02070.1 | Symbols: | Cysteine proteinases superfamily prot... 1075 0.0
> AT3G02070.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:360921-363429 FORWARD LENGTH=1142
Length=1142
Score = 1075 bits (582), Expect = 0.0
Identities = 635/661 (96%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 1 ATGGGAGACTCTTCGAGTTCAACCTCTAGGAGCAGTAAAAATGATACCGAAGATGATCGG 60
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 186 ATGGGAGACTCTTCGAGTTCAACCTCTTGGAGCAGTAAAAAGGATACGGAAGATGATCGG 245
Query 61 ATGATTGCTCTTATGTTATCTGAAGAGTACTCAAAACTAGATGGTGCAGTCGGCAGACGC 120
||||||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 246 ATGATTGCTTTTATGTTATCTGAAGAGTACTCTAAACTAGACGGTGCGGTCGGCAGACGC 305
Query 121 CTCTCAAATCTTGCTCCTGTCCCTCATGTTCCCCGAATAAATTGTTATATTCCCAACTTA 180
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 306 CTCTCAAATCTTGCTCCCGTCCCTCATGTTCCACGAATAAATTGTTATATTCCCAACTTA 365
Query 181 AATGATGCCACCTTGGATCACCAACGCCTTCTTCAAAGGTTAAATGTTTACGGTTTGTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 AATGATGCCACCTTGGATCACCAACGCCTTCTTCAAAGGTTAAATGTTTACGGTTTGTGT 425
Query 241 GAGTTGAAAGTCTCTGGTGATGGAAACTGCCAGTTTCGAGCAGTTTCTGACCAGTTATAC 300
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 426 GAGTTGAAGGTCTCTGGTGATGGAAACTGCCAGTTCCGAGCCCTTTCTGACCAGTTATAC 485
Query 301 CGATCTCCAGAGTACCACAAGCAAGTTAGGAGAGAAGTTGTTAAACAGCTCAAAGACTGT 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 486 CGATCTCCAGAGTACCACAAGCAAGTGAGGAGAGAAGTTGTTAAACAGCTCAAAGAGTGT 545
Query 361 CGCTCTATGTATGAAAGTTATGTTCCGATGAAATACAAACGATATTACAAGAGGATGGGA 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 546 CGTTCTATGTATGAAAGTTATGTTCCGATGAAATACAAACGATATTACAAGAAGATGGGA 605
Query 421 AAACTTGGAGAATGGGGAGACCATATTACCTTACAAGCTGCGGCAGATAGGTTTGCAGCA 480
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 606 AAATTTGGAGAATGGGGAGACCATATTACCCTACAAGCTGCGGCAGATAGGTTTGCAGCA 665
Query 481 AAGATATGCCTACTGACATCCTTTAGAGACACTTGTTTCATTGAAATTATACCTCAATAC 540
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 AAGATATGCTTGCTGACATCCTTTAGAGACACTTGTTTCATTGAAATTATACCTCAATAC 725
Query 541 CAAGCACCTAAGCGTGAGTTATGGTTAAGTTTCTGGTCAGAGGTGCATTATAACTCTTTA 600
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CAAGCACCTAAGGGTGTGTTATGGTTAAGTTTCTGGTCAGAGGTGCATTATAACTCTTTA 785
Query 601 TATGATATTCAAGCTGCTCCAGTTCAGCATAAGGCCAA-GAGAAAACATTGGTTGTTCTA 659
|| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 786 TACGATATTCAAGCTGCTCCAGTTCAGCATAAG-CCAAAGAGAAAACATTGGTTGTTCTA 844
Query 660 G 660
|
Sbjct 845 G 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5