BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg902899

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family prote...   267    1e-70
  AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family prote...   226    2e-58


> AT3G01850.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr3:299987-302038 REVERSE LENGTH=1056
Length=1056

 Score =  267 bits (144),  Expect = 1e-70
 Identities = 173/187 (93%), Gaps = 1/187 (1%)
 Strand=Plus/Plus

Query  207  GGACGGGCATTTTGTCCCGAATCTAACCATTGGTCCTCCTGTCATCGAGAGTTTGCGAAA  266
            |||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||
Sbjct  165  GGACGGGCATTTTGTCCCTAATCTTACGATTGGTGCTCCTGTCATCGAGAGTTTGCGAAA  224

Query  267  GCACACAAATGCATATCTTGATTGCCACCTTATGGTGACGAACCCCATCGATTACGTGGA  326
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | 
Sbjct  225  GCACACTAATGCATATCTTGATTGCCACCTTATGGTGACGAACCCCATGGATTACGTTGC  284

Query  327  ACACATGGCTAAAGCTGGTGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCAAAGGTAT  386
            ||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| || 
Sbjct  285  ACAGATGGCTAAAGCTGGGGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCCAAGATA-  343

Query  387  ATTAGCA  393
            ||| |||
Sbjct  344  ATTGGCA  350


 Score =  198 bits (107),  Expect = 5e-50
 Identities = 120/126 (95%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  465  GTCTGCTGGGATGAGGCCA-GCTGTGGCTCTAAAGCCTGGAACACCTGTCGAACAAGTCT  523
            |||| |||||||||| ||| || |||||||||||||||||||||||||| ||||||||||
Sbjct  372  GTCTACTGGGATGAGACCAGGC-GTGGCTCTAAAGCCTGGAACACCTGTTGAACAAGTCT  430

Query  524  ATCCTCTGGTTGAAGGAACAACTCCGGTTGAAATGGTTCTTGTGATGACTGTAGAACCTG  583
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  ATCCTCTGGTTGAAGGGACAACTCCGGTTGAAATGGTTCTTGTGATGACTGTAGAACCTG  490

Query  584  GATTTG  589
            ||||||
Sbjct  491  GATTTG  496


> AT1G63290.1 | Symbols:  | Aldolase-type TIM barrel family protein 
| chr1:23471849-23473639 REVERSE LENGTH=979
Length=979

 Score =  226 bits (122),  Expect = 2e-58
 Identities = 159/177 (90%), Gaps = 2/177 (1%)
 Strand=Plus/Plus

Query  207  GGACGGGCATTTTGTCCCGAATCTAACCATTGGTCCTCCTGTCATCGAGAGTTTGCGAAA  266
            |||||||||||||||  | || ||||| |||||| |||||||||||||||||||| | ||
Sbjct  169  GGACGGGCATTTTGTTTCTAACCTAACGATTGGTGCTCCTGTCATCGAGAGTTTGAGGAA  228

Query  267  GCACACAAATGCATATCTTGATTGCCACCTTA-TGGTGACGAACCCCATCGATTACGTGG  325
            |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||
Sbjct  229  GCACACAAATGCATATCTTGATTGCCAC-TTAATGGTGACGAACCCCATGGATTATGTGG  287

Query  326  AACACATGGCTAAAGCTGGTGCTTCTGGTTTCACATTCCACGTCGAGGTGGCCAAAG  382
            | || |||||||||||||| || |||||||||||||||||||| ||||||||| |||
Sbjct  288  ATCAGATGGCTAAAGCTGGGGCGTCTGGTTTCACATTCCACGTTGAGGTGGCCCAAG  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30693063817


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5